View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_16 (Length: 320)
Name: NF19065_low_16
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_16 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 43879178 - 43878858
Alignment:
| Q |
1 |
aaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatctt |
100 |
Q |
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| T |
43879178 |
aaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatctt |
43879079 |
T |
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| Q |
101 |
caatgccaattcattaacacatgaatcattcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttcacaaaactcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43879078 |
caatgccaattcattaacacatgaatcattcttcttattccctttgtcttttttctctttcactccattttctggactaatttgtttcacaaaactcaca |
43878979 |
T |
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| Q |
201 |
tg-nnnnnnncaatacttgcagcatcttccattgtttgttctcttgacacattcatgctaatttcaccattcctgtttattctattgagatcagactgaa |
299 |
Q |
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| T |
43878978 |
tgttttttttcaatacttgcagcatcttccattgttttttctcttgacacattcatgctaatttcaccattcctgtttattctattgagatcagactgaa |
43878879 |
T |
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| Q |
300 |
gaatatcataaaactcgttgt |
320 |
Q |
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| T |
43878878 |
gaatatcataaaactcgttgt |
43878858 |
T |
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Target: scaffold0147 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 7618 - 7701
Alignment:
| Q |
18 |
cgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttc |
101 |
Q |
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|||||||| ||||||||||||||||| || |||||||| ||||||| |||||||||||| |||| || ||||||||||||||| |
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| T |
7618 |
cgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctgaatccatcatatctaattccttcatcttc |
7701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 13202 - 13285
Alignment:
| Q |
18 |
cgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctgaatcattcatctccaattccttcatcttc |
101 |
Q |
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|||||||| |||||||||||||||||||| ||||| || ||||||| ||||||||| || |||| |||| || |||||||||| |
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| T |
13202 |
cgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctgattccatcatatccattttcttcatcttc |
13285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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