View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_17 (Length: 312)
Name: NF19065_low_17
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 32745839 - 32746141
Alignment:
| Q |
1 |
acaaaagctcattattttcttcgatatgatacacaagatgaatctgttaatgtaccctggagaaatattttcttcagcttccgagttttgtcttgctctt |
100 |
Q |
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| T |
32745839 |
acaaaagctcattattttcttcgatatgatacacaagatgaatctgttaatgtaccctggagcaatattttcttcagcttccgagttttgtcttgctctt |
32745938 |
T |
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| Q |
101 |
tattttcgaccaaataagaacaagagaaaatcccatcaaatacatacgcggagactgcaagtaaaattatcaacttatattaccataaaataaatctgct |
200 |
Q |
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| T |
32745939 |
tattttccaccaaatcagaacaagagaaaatcccatcaaatacataagtggagactgcaagtaaaagtatcaacttatattaccataaaataaatctgtt |
32746038 |
T |
|
| Q |
201 |
aaacaactgtacctagactaaataatcatgcaaaatgcttaaaagcccttctattttcttgaccacaacaaaaactttttccgacactacaaagcattca |
300 |
Q |
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| T |
32746039 |
aaacagctcaacctagactaaataatcattcaaaatgcttaaaagcccttctattttcttgaccacaacaaaaactttttccgacactacaaagcattca |
32746138 |
T |
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| Q |
301 |
tct |
303 |
Q |
| |
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||| |
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| T |
32746139 |
tct |
32746141 |
T |
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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 3287514 - 3287422
Alignment:
| Q |
69 |
tttcttcagcttccgagttttgtcttgctctttattttcgaccaaataagaacaagagaaaatcccatcaaatacatacgcggagactgcaag |
161 |
Q |
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| T |
3287514 |
tttcttcagctgccatgttttttcttgctctttattttcgaccaaatcagaacaagagaaaatcccatcaaagacataagcggagactgcaag |
3287422 |
T |
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