View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_20 (Length: 280)
Name: NF19065_low_20
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 1516160 - 1515902
Alignment:
| Q |
9 |
gaagaaaatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcag |
108 |
Q |
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| T |
1516160 |
gaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcag |
1516061 |
T |
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| Q |
109 |
gatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1516060 |
gatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaat |
1515961 |
T |
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| Q |
209 |
gtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1515960 |
gtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctt |
1515902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 1530390 - 1530132
Alignment:
| Q |
9 |
gaagaaaatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcag |
108 |
Q |
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| T |
1530390 |
gaagaatatgactttgagttgagtttgggtttgagaagaagtaggttgatggaacaaatggttgagttgaatagaaggtctcatacacgtatggctgcag |
1530291 |
T |
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| Q |
109 |
gatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcataataactagtttcctttccatatgattattttgttaat |
208 |
Q |
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| T |
1530290 |
gatcatcatcatcatggggtagtagaatgagggccaaaaacaatataaccaaagatgatcatactaactagtttcctttccatatgattattttgttaat |
1530191 |
T |
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| Q |
209 |
gtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1530190 |
gtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctt |
1530132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 267
Target Start/End: Original strand, 7978452 - 7978611
Alignment:
| Q |
119 |
atcatggggtagtagaatgagggccaaaaacaa---tataaccaaagatgatcataataactagt-----------ttcctttccatatgattattttgt |
204 |
Q |
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|||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||| | |||||||||||| |
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| T |
7978452 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgt |
7978551 |
T |
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| Q |
205 |
taatgtattgtttcatataattaacattacattcattcatctattgatccaaaaattattctt |
267 |
Q |
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|||| |||||||||| ||||||| ||||||||||||| |||||||||||| | ||||||| |
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| T |
7978552 |
---tgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctt |
7978611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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