View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_24 (Length: 262)
Name: NF19065_low_24
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 1464553 - 1464318
Alignment:
| Q |
11 |
cacagacacactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggct |
110 |
Q |
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| T |
1464553 |
cacagacacactttcactcgtcagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggct |
1464454 |
T |
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| Q |
111 |
taccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaa |
210 |
Q |
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| T |
1464453 |
taccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaa |
1464354 |
T |
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| Q |
211 |
gaccatggcgtgatctttgcgctgatgcccattgtg |
246 |
Q |
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| T |
1464353 |
gaccatggcgtgatctttgcgctgatgcccattgtg |
1464318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 1491905 - 1491707
Alignment:
| Q |
50 |
attcattactcttcaaca-ataatttccacttctgaaatctttttcaa-ccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctg |
147 |
Q |
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| T |
1491905 |
attcattactcttcaatacatactttccacttctttaatcttttttaaaccatttaaatggattaacttgcaacttcagcatgtttcttgtcttgctctg |
1491806 |
T |
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| Q |
148 |
caatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatggcgtgatctttgcgctgatgcccattgtg |
246 |
Q |
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| T |
1491805 |
caatctctgaaagctccctatagctactattttcattgaaaaggtttgaggtaaaaggttgaagaccatgaagtgatccttgtgttgtttcccattgtg |
1491707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 1490388 - 1490476
Alignment:
| Q |
89 |
tttttcaaccattcaattggcttaccttgccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactat |
177 |
Q |
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| T |
1490388 |
tttttaaaccattcaaatggcttaccttgcaactacaacgtgtttcttgtcttgctctacaatctctgaaagctccctttagctactat |
1490476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 26792250 - 26792030
Alignment:
| Q |
18 |
acactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggcttaccttg |
117 |
Q |
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| T |
26792250 |
acactttcactcataagtgtttgtgatacataattcattactcttcaataataatttccactt--------tttttcaaccattcaagtggcttaccttg |
26792159 |
T |
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| Q |
118 |
ccatttcagcacgtttcttggcttgctctgcaatctctgaaagctcctcatagctactatactcattgatagtgttggaggtaggaggctgaagaccatg |
217 |
Q |
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| T |
26792158 |
caatttcggcacgtttcctggctagatctgcaatttctgaaagctccttatagctactattttcattgaaagtgtaggagctagaaggctgaagaccatg |
26792059 |
T |
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| Q |
218 |
gcgtgatctttgcgctgatgcccattgtg |
246 |
Q |
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| T |
26792058 |
aattgatctttgtgttgatgcccattgtg |
26792030 |
T |
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