View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_27 (Length: 248)
Name: NF19065_low_27
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 35853379 - 35853602
Alignment:
| Q |
13 |
aatatataaagttgataataccgtcaaatataaatttcaaattaataataatagtggtaacagtaacaaaagtagtttaaagaacaaaacaaaggcaaaa |
112 |
Q |
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| T |
35853379 |
aatatataaagttgagaataccgtcaaatataaatttcaaattaataataatagtggtaacagtagcaaaagtagtttaaagaacaaaacaaaggcaaaa |
35853478 |
T |
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| Q |
113 |
gaataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcc-----tcctgccttaaatgtttcgacag |
207 |
Q |
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| T |
35853479 |
gaataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgtcctgccttaaatgtttcgacag |
35853578 |
T |
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| Q |
208 |
cacagtcaagaaagctagtgtatg |
231 |
Q |
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| T |
35853579 |
cacagtcaagaaagctagtgtatg |
35853602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 35858020 - 35858180
Alignment:
| Q |
71 |
aacagtaacaaaagtagtttaaagaacaaaacaaaggcaaaagaataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaa |
170 |
Q |
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| T |
35858020 |
aacagtaacaatagtcgtttgaagaacaaaacaaaggcaaaagaaaaataccgtgacacaaggaaaaatcctggcacaatagacggagaatccagtgtaa |
35858119 |
T |
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| Q |
171 |
aacttcaaaggtcctcctgccttaaatgtttcgacagcacagtcaagaaagctagtgtatg |
231 |
Q |
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| T |
35858120 |
aacttcaaaggtcctcctgctatgagagttttgacagcacagtcaacatagccagtgtatg |
35858180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 35748833 - 35748697
Alignment:
| Q |
95 |
aacaaaacaaaggcaaaagaataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgcctta |
194 |
Q |
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| T |
35748833 |
aacaaaacaaaggtaaaagaataataccatgacaccaatagaaatcctgacacaatagagagggaatccagtgtaaaatttcaaaattcctcctgctttg |
35748734 |
T |
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| Q |
195 |
aatgtttcgacagcacagtcaagaaagctagtgtatg |
231 |
Q |
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| T |
35748733 |
taggttttgacagcgcaatcaagaaagccggtgtatg |
35748697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 35729367 - 35729248
Alignment:
| Q |
112 |
agaataatactatgacttgcggagtaatcctggcacaatagatagggaatccagtgtaaaacttcaaaggtcctcctgccttaaatgtttcgacagcaca |
211 |
Q |
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|||||| ||| ||||| || |||| |||||| |||| |||| |||||||||||||||||| || || ||||||||||| || || |||| ||| ||||| |
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| T |
35729367 |
agaatagtaccatgacgtggggagcaatcctaacacagtagacagggaatccagtgtaaaatttgaagggtcctcctgctttgaaggttttgacggcaca |
35729268 |
T |
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| Q |
212 |
gtcaagaaagctagtgtatg |
231 |
Q |
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||||||| | | |||||||| |
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| T |
35729267 |
gtcaagagaaccagtgtatg |
35729248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 35857943 - 35857992
Alignment:
| Q |
13 |
aatatataaagttgataataccgtcaaatataaatttcaaattaataata |
62 |
Q |
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| T |
35857943 |
aatatataaagctgagaataccctcaaatataaattttaaatttataata |
35857992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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