View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_30 (Length: 240)
Name: NF19065_low_30
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 5681397 - 5681612
Alignment:
| Q |
16 |
tcaagaacatccaatagccctatagctatagatcataaaaataacaataacaataaggggatgnnnnnnnnnnnnnnngctatgaaaccatatagaggaa |
115 |
Q |
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| T |
5681397 |
tcaagaacaaccaatagccctatagctatagatcataaaaataacaataacaataaggggatgaaaaaagagaaaaaagctatgaaaccatatagaggaa |
5681496 |
T |
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| Q |
116 |
taaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacataacacctattgctgctgc |
215 |
Q |
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| T |
5681497 |
taaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacataacacctattgctgctgc |
5681596 |
T |
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| Q |
216 |
acgtgcctatgctact |
231 |
Q |
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|||||| |||| |||| |
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| T |
5681597 |
acgtgcttatgatact |
5681612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 47038527 - 47038402
Alignment:
| Q |
99 |
gaaaccatatagaggaataaggatgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttcttacata |
198 |
Q |
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| T |
47038527 |
gaaaccatacagaggaataaggaagagaaagtggggtaagtgggtagcagaaataagagaaccaaataaaagatcaagaatatggttaggttcttacatc |
47038428 |
T |
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| Q |
199 |
acacctattgctgctgcacgtgccta |
224 |
Q |
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| T |
47038427 |
actccggtagctgctgctcgtgccta |
47038402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 32669905 - 32669953
Alignment:
| Q |
146 |
cagagattagagaaccaaacaaaagatcaagaatttggttaggttctta |
194 |
Q |
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| T |
32669905 |
cagagattagagcaccaaatcaaaaaacaagaatttggttaggttctta |
32669953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 6026620 - 6026690
Alignment:
| Q |
121 |
atgagaaagtggggtaagtgggtggcagagattagagaaccaaacaaaagatcaagaatttggttaggttc |
191 |
Q |
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| T |
6026620 |
atgagaaagtggggaaaatgggtagctgaaattcgagaaccaaacaaacgttctcgaatttggttaggttc |
6026690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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