View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19065_low_33 (Length: 237)

Name: NF19065_low_33
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19065_low_33
NF19065_low_33
[»] chr7 (21 HSPs)
chr7 (147-222)||(20279172-20279247)
chr7 (1-150)||(20284701-20284856)
chr7 (148-222)||(20273461-20273535)
chr7 (147-222)||(20294271-20294346)
chr7 (147-222)||(20168463-20168538)
chr7 (149-222)||(20231191-20231264)
chr7 (149-222)||(20283749-20283822)
chr7 (152-222)||(20263646-20263716)
chr7 (160-222)||(20062921-20062983)
chr7 (169-222)||(20243156-20243209)
chr7 (162-222)||(20303337-20303397)
chr7 (16-90)||(20273634-20273707)
chr7 (16-89)||(20243436-20243508)
chr7 (16-89)||(20263830-20263902)
chr7 (16-58)||(20168248-20168290)
chr7 (16-58)||(20279369-20279411)
chr7 (160-218)||(20288874-20288932)
chr7 (170-218)||(19938683-19938731)
chr7 (170-218)||(19969822-19969870)
chr7 (18-60)||(20303546-20303588)
chr7 (7-60)||(20231399-20231452)
[»] chr8 (4 HSPs)
chr8 (164-218)||(4151504-4151558)
chr8 (169-218)||(4143636-4143685)
chr8 (165-218)||(4131058-4131111)
chr8 (165-218)||(4120795-4120848)
[»] chr4 (1 HSPs)
chr4 (162-215)||(40824206-40824259)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 20279247 - 20279172
Alignment:
Q  147 agtgttaaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20279247 agtgttaaagggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 20279172  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 20284856 - 20284701
Alignment:
Q  1 tcgattatgctatatcgtgtcctccaatccaggagcttattttttgatggatctaaaataataatggtagaac----tataatattttgaatatgatatc 96  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||  ||    ||||||| |||||| ||||||||    
T  20284856 tcgattatgctatatcgtatcctccaatccaggagcttatttttttatggatctacaataataagggtatcactatatataatagtttgaacatgatatc 20284757  T
Q  97 aagatataaaatgaagacattaaaat--ttatcttccaaaaacttcaccggcagtg 150  Q
    |||||||||| ||||| ||| |||||  | ||||||||||||| |||| |||||||    
T  20284756 aagatataaagtgaagtcatcaaaatcataatcttccaaaaacatcactggcagtg 20284701  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 20273535 - 20273461
Alignment:
Q  148 gtgttaaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20273535 gtgttaaagggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 20273461  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 20294346 - 20294271
Alignment:
Q  147 agtgttaaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20294346 agtgttaaagggggcttcaacgaactaaccaaagatgaatgcatccaaactcttgtttggcatgtactcatacatc 20294271  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 20168463 - 20168538
Alignment:
Q  147 agtgttaaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  20168463 agtgttaaagggggctttaaagaactaaccaaagatgaatgcatccaaacttctgtttagcatgtactcatacatc 20168538  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 20231264 - 20231191
Alignment:
Q  149 tgttaaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    ||||||| |||||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  20231264 tgttaaagggggcttcaaaagactaaccaaagatgaatgaatccaaacttttgtttggcatgtattcatacatc 20231191  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 20283822 - 20283749
Alignment:
Q  149 tgttaaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||    
T  20283822 tgttaaacggggcttcaaagaactaaccaaagatgaacgcatccaaagttttatttggcatgtcctcatacatc 20283749  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 20263716 - 20263646
Alignment:
Q  152 taaaaggggcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    |||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20263716 taaagggggattaaaaaaactaaccaaagatgaatgcatccaaacttttgtttggcatatactcatacatc 20263646  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 20062921 - 20062983
Alignment:
Q  160 gcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  20062921 gcttcgaaaaactaaccgaagataaatgcatccaaacttttgtttggcatgtactcatacatc 20062983  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 20243209 - 20243156
Alignment:
Q  169 aactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  20243209 aactaaccaaagataaatgcatccaaacttttgtttggcatgtattcatacatc 20243156  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 20303397 - 20303337
Alignment:
Q  162 ttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatc 222  Q
    |||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  20303397 ttcaaaaaactaaccaaagataaatgcatctaaacttttgttaggcatgtactcatacatc 20303337  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 20273707 - 20273634
Alignment:
Q  16 cgtgtcctccaatccaggagcttattttttgatggatctaaaataataatggtagaactataatattttgaatat 90  Q
    ||||| |||||||| ||||| |||||||||||||||||||||| ||||| ||||| | |||| ||||||||||||    
T  20273707 cgtgtactccaatctaggagtttattttttgatggatctaaaa-aataagggtagcattatattattttgaatat 20273634  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 20243508 - 20243436
Alignment:
Q  16 cgtgtcctccaatccaggagcttattttttgatggatctaaaataataatggtagaactataatattttgaata 89  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||| ||||| | |||| ||||| |||||    
T  20243508 cgtgtcctccaatccaggagtttgttttttgatggatctaaaa-aataagggtagcattatattatttagaata 20243436  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 20263902 - 20263830
Alignment:
Q  16 cgtgtcctccaatccaggagcttattttttgatggatctaaaataataatggtagaactataatattttgaata 89  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||| ||||| | |||| ||||| |||||    
T  20263902 cgtgtcctccaatccaggagtttgttttttgatggatctaaaa-aataagggtagcattatattatttagaata 20263830  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 20168248 - 20168290
Alignment:
Q  16 cgtgtcctccaatccaggagcttattttttgatggatctaaaa 58  Q
    |||||||||||||| ||||| ||||||||||||||||||||||    
T  20168248 cgtgtcctccaatctaggagtttattttttgatggatctaaaa 20168290  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 20279411 - 20279369
Alignment:
Q  16 cgtgtcctccaatccaggagcttattttttgatggatctaaaa 58  Q
    |||||||||||||| ||||| ||||||||||||||||||||||    
T  20279411 cgtgtcctccaatctaggagtttattttttgatggatctaaaa 20279369  T

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Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 20288932 - 20288874
Alignment:
Q  160 gcttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    ||||||| ||||| |||||| |  ||||||||||||||||| |||||||||||||||||    
T  20288932 gcttcaaggaactgaccaaacacaaatgcatccaaacttttatttggcatgtactcata 20288874  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 19938731 - 19938683
Alignment:
Q  170 actaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    ||||||||||||  || |||||||||||||| |||||||||||||||||    
T  19938731 actaaccaaagagaaaagcatccaaacttttatttggcatgtactcata 19938683  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 19969870 - 19969822
Alignment:
Q  170 actaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    ||||||||||||  || |||||||||||||| |||||||||||||||||    
T  19969870 actaaccaaagagaaaagcatccaaacttttatttggcatgtactcata 19969822  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 20303588 - 20303546
Alignment:
Q  18 tgtcctccaatccaggagcttattttttgatggatctaaaata 60  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  20303588 tgtcctccaatctaggagtttactttttgatggatctaaaata 20303546  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 20231452 - 20231399
Alignment:
Q  7 atgctatatcgtgtcctccaatccaggagcttattttttgatggatctaaaata 60  Q
    |||||||| |||||||||| ||| ||||| || |||||||||||||||| ||||    
T  20231452 atgctataccgtgtcctccgatctaggagtttgttttttgatggatctagaata 20231399  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 4151504 - 4151558
Alignment:
Q  164 caaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  4151504 caaagaactaaccaaagaggaatgcatccaaacttttatttggcatgaactcata 4151558  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 4143636 - 4143685
Alignment:
Q  169 aactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4143636 aactaaccaaagaggaatgcatccaaacttttgtttggcatgaactcata 4143685  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 4131058 - 4131111
Alignment:
Q  165 aaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    |||||||||||||||||  || |||||||||||||| ||||||||| |||||||    
T  4131058 aaagaactaaccaaagagaaaggcatccaaacttttatttggcatgaactcata 4131111  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 4120795 - 4120848
Alignment:
Q  165 aaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcata 218  Q
    |||||||||||||||||| ||  |||||||||| || ||||||||| |||||||    
T  4120795 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcata 4120848  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 40824206 - 40824259
Alignment:
Q  162 ttcaaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactc 215  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||||||||||||    
T  40824206 ttcaaagaactgaccaaagacaaatgcatccaaacttttatttggcatgtactc 40824259  T

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