View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_38 (Length: 205)
Name: NF19065_low_38
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 49308757 - 49308564
Alignment:
| Q |
1 |
ccttcatcttctctcgcttgtacacggcttcttctttgttctgaaatttcagatcctagtcctgcacaactattaatttttaattttctttcacttgaca |
100 |
Q |
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| T |
49308757 |
ccttcatcttctctctcttgtacacggcttcttctttgttctgaaatttcagatcctagtcctgcacaactattaatttttaattttctttcacttgaca |
49308658 |
T |
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| Q |
101 |
tccttctttatctcgtgggtactattatcatagtaaaaaattgcatgtttgtgtctttttcttccacaattgctaaagtccttagtaacatccc |
194 |
Q |
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| T |
49308657 |
tccttctttatctcgtgggtactattatcatagtaaaaaattgcatgttcgtgtctttttcttccacaattgttaaagtccttagaaacatccc |
49308564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 41610138 - 41609945
Alignment:
| Q |
1 |
ccttcatcttctctcgcttgtacacggcttcttctttgttctgaaatttcagatcctagtcctgcacaactattaatttttaattttctttcacttgaca |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41610138 |
ccttcatcttctctctcttgtacacggcttcttctttgttctgaaatttcagatcctagtcctgcacaactattaaattttaattttctttcacttgaca |
41610039 |
T |
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| Q |
101 |
tccttctttatctcgtgggtactattatcatagtaaaaaattgcatgtttgtgtctttttcttccacaattgctaaagtccttagtaacatccc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
41610038 |
tccttctttatctcgtgggtactattatcatagtaagaaattgcatgtttgtgtctttttcttccacaattgttaaagtccttagaaacatccc |
41609945 |
T |
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