View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_5 (Length: 512)
Name: NF19065_low_5
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 8944679 - 8944200
Alignment:
| Q |
18 |
aaacattactcatatctatatttctgtcaaactttcatgttatcacgtttcgtttacatccttatattttactacttattatcaatttcgtcccagtaaa |
117 |
Q |
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| T |
8944679 |
aaacattgatcatatctatctttctgtcaaactttatcgttaacacgtttcgcttacatccttatatttaaccacttagtatcaatttcgtctcaggaaa |
8944580 |
T |
|
| Q |
118 |
acgatgttaagcaactaagtttgacaaaaggatgaatgtgagtaacattaaaacgacgtcatgtaacatttgaaatattcataatttgacatacctattt |
217 |
Q |
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| T |
8944579 |
aagatgctaagaaactaagtttgacaaaaggatgaatgtgagtaacattaaaacgacgtcatgtaacatttgaaatattcataatttgacatacctattt |
8944480 |
T |
|
| Q |
218 |
aaaagaacttcacaaaatcataagccaatttgatggtttactcattagtactgctgagctgatcaaatattatatacaaagcatgatgcacctttttctt |
317 |
Q |
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| T |
8944479 |
aaaagaacttcacaaaatcataggccaatttgatggtttactcgt---cactgctgagctgatcaaacattatatacaaagcatgatgcacctttttctt |
8944383 |
T |
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| Q |
318 |
tgacaaagtatatatgctgactttacaatgtacctagccacggagtcgtgtctccaaatcaatttgtccaaaaaatctgcactaatagtgatccctgcaa |
417 |
Q |
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| T |
8944382 |
tgacaaagtatatatgctgactttacagtgtacctagccacggagtcgtgtctccaaatcaatttgtccgaaaaatctgcactaatagtgatccctgcaa |
8944283 |
T |
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| Q |
418 |
tgacagcctctgactcaagcactaatagtgatccctttcacgagaacaaaggttgtctccagttcatgatccactcccatctg |
500 |
Q |
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| T |
8944282 |
tgacagcctctgactcaagcaataatagtgatccctttcacgagaacaaaggttgtctccagttcatgctccactcccatctg |
8944200 |
T |
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Back To:
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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 428
Target Start/End: Original strand, 43564406 - 43564510
Alignment:
| Q |
324 |
agtatatatgctgactttacaatgtacctagccacggagtcgtgtctccaaatcaatttgtccaaaaaatctgcactaatagtgatccctgcaatgacag |
423 |
Q |
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||||||||||| |||||||| |||||| |||||||||||| |||||| ||| | |||||||| ||||||||||||| | ||||||||||||||| |||| |
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| T |
43564406 |
agtatatatgcagactttaccgtgtacccagccacggagtcatgtctctaaacccatttgtccgaaaaatctgcactcacagtgatccctgcaataacag |
43564505 |
T |
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| Q |
424 |
cctct |
428 |
Q |
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||||| |
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| T |
43564506 |
cctct |
43564510 |
T |
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