View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19065_low_6 (Length: 505)

Name: NF19065_low_6
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19065_low_6
NF19065_low_6
[»] chr4 (9 HSPs)
chr4 (10-487)||(51148730-51149207)
chr4 (16-258)||(51159627-51159869)
chr4 (290-487)||(51159873-51160070)
chr4 (15-230)||(29934185-29934400)
chr4 (267-485)||(29933961-29934179)
chr4 (327-487)||(51202609-51202769)
chr4 (19-220)||(51202238-51202439)
chr4 (326-485)||(51216269-51216428)
chr4 (67-221)||(51215340-51215494)
[»] chr3 (4 HSPs)
chr3 (326-485)||(49734074-49734233)
chr3 (324-473)||(36288937-36289086)
chr3 (17-222)||(36288635-36288840)
chr3 (67-222)||(49734523-49734678)
[»] chr8 (1 HSPs)
chr8 (352-479)||(27727391-27727518)
[»] chr2 (1 HSPs)
chr2 (397-473)||(5827236-5827312)
[»] chr6 (2 HSPs)
chr6 (371-473)||(29327103-29327205)
chr6 (434-470)||(2675124-2675160)
[»] chr1 (1 HSPs)
chr1 (373-485)||(38525269-38525381)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 487
Target Start/End: Original strand, 51148730 - 51149207
Alignment:
Q  10 attattcttgatggaatagaaattcaaaggatgcaagtgaaatggctaagacaacagatgggactggtaagccaagagcctattcttttcaatgacacgg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51148730 attactcttgatggaatagaaattcaaaggatgcaagtgaaatggctaagacaacagatgggactggtaagccaagagcctattcttttcaatgacacgg 51148829  T
Q  110 ttcgggcgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51148830 ttcgggcgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagttt 51148929  T
Q  210 gcagaaggtaaattcctttcaatccaacctctcttaaatgctatgcaactaagatacatctttaaaattgaaacatacgcacatacattagtctgaactc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51148930 gcagaaggtaaattcctttcaatccaacctctcttaaatgctatgcaactaagatacatctttaaaattgaaacatacgcacatacattagtctgaactc 51149029  T
Q  310 ttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagag 409  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51149030 ttgaacatgatactatatatgtagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagag 51149129  T
Q  410 ctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtac 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  51149130 ctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtac 51149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 51159627 - 51159869
Alignment:
Q  16 cttgatggaatagaaattcaaaggatgcaagtgaaatggctaagacaacagatgggactggtaagccaagagcctattcttttcaatgacacggttcggg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  51159627 cttgatggaatagaaattcaaaggatgcaggtgaaatggctaagacaacagatgggactggtaagccaagagcctgttcttttcaatgacacggttcgag 51159726  T
Q  116 cgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaa 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51159727 ccaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaa 51159826  T
Q  216 ggtaaattcctttcaatccaacctctcttaaatgctatgcaac 258  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  51159827 ggtaaattcctttcaatccaacctctcttaaatgctttgcaac 51159869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 290 - 487
Target Start/End: Original strand, 51159873 - 51160070
Alignment:
Q  290 acatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagca 389  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51159873 acatacataggtctgaaatcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaattcaattatccgggggacagaagca 51159972  T
Q  390 gcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtac 487  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  51159973 gcgtgtggcaattgcacgagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtac 51160070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 29934400 - 29934185
Alignment:
Q  15 tcttgatggaatagaaattcaaaggatgcaagtgaaatggctaagacaacagatgggactggtaagccaagagcctattcttttcaatgacacggttcgg 114  Q
    ||||||||||| ||||||||||||| | ||| |||||||||| |||||||| ||||| || ||||||||||||||| |||||||||||||||| || ||     
T  29934400 tcttgatggaaaagaaattcaaaggcttcaactgaaatggctgagacaacaaatggggctagtaagccaagagcctgttcttttcaatgacacagtccga 29934301  T
Q  115 gcgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcaga 214  Q
    || ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  29934300 gccaatattgcatacggaaaaggaggagatgcaacagaagcagaaattgtagccgcggcagaactagcaaatgctcaccagttcattagtagtttgcaga 29934201  T
Q  215 aggtaaattcctttca 230  Q
    ||||||||||||||||    
T  29934200 aggtaaattcctttca 29934185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 267 - 485
Target Start/End: Complemental strand, 29934179 - 29933961
Alignment:
Q  267 atctttaaaattgaaacatacgcacatacattagtctgaactcttgaacatgatactatatatgcagggctatgacacgatagtaggtgagagaggaatt 366  Q
    |||||||||||||||||||||  ||||||||  |||  || |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  29934179 atctttaaaattgaaacatacatacatacataggtccaaaatcttgagcatggtactatatatgcagggctatgacacgatagtaggcgagagaggaatt 29934080  T
Q  367 caattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatg 466  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29934079 caattatccgggggacagaagcagcgggtggcaattgcaagagcgttggtgaagaatccgaaaatactattactagatgaagcaactagtgcacttgatg 29933980  T
Q  467 ctgagtctgagaaggtggt 485  Q
    |||||||||| || |||||    
T  29933979 ctgagtctgaaaaagtggt 29933961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 327 - 487
Target Start/End: Original strand, 51202609 - 51202769
Alignment:
Q  327 tatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca 426  Q
    ||||||||| ||||| ||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51202609 tatgcagggttatgatacagtagtaggagagagaggagttcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcca 51202708  T
Q  427 aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtac 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51202709 aaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtac 51202769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 51202238 - 51202439
Alignment:
Q  19 gatggaatagaaattcaaaggatgcaagtgaaatggctaagacaacagatgggactggtaagccaagagcctattcttttcaatgacacggttcgggcga 118  Q
    ||||||| |||||| |||||  | ||||||||||||||||||||||| |||||||||||||||||||||||| | || || ||||||||  |  | || |    
T  51202238 gatggaaaagaaatccaaagtcttcaagtgaaatggctaagacaacaaatgggactggtaagccaagagcctgtgctgtttaatgacaccatcagagcca 51202337  T
Q  119 atattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggt 218  Q
    |||||||||| || ||||||||||||||| |||||||||| ||| ||||||| |||||| |||||||||||||| |||| ||| |||||||||| |||||    
T  51202338 atattgcatatggtaaaggaggagatgcatcagaggcagagattatagctgcagcagaattagcaaatgctcacaagtttattagtagtttgcaaaaggt 51202437  T
Q  219 aa 220  Q
    ||    
T  51202438 aa 51202439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 326 - 485
Target Start/End: Original strand, 51216269 - 51216428
Alignment:
Q  326 atatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc 425  Q
    |||||||||| ||||| || |||||||| ||| |||| |||||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| || |  ||    
T  51216269 atatgcaggggtatgatacaatagtaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggcc 51216368  T
Q  426 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggt 485  Q
    || |||| || |||||||||| || || ||||| |||||||| |||||||| || |||||    
T  51216369 aagaatattactactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggt 51216428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 51215340 - 51215494
Alignment:
Q  67 atgggactggtaagccaagagcctattcttttcaatgacacggttcgggcgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtag 166  Q
    |||||||||||||||||||||||| | || || ||||||||  |  | || || ||||| || |||||||| ||  ||||||| ||||| ||| || |||    
T  51215340 atgggactggtaagccaagagcctgtgctgtttaatgacaccatcagagctaacattgcctatggaaaaggtggtaatgcaactgaggctgaagttatag 51215439  T
Q  167 ctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaa 221  Q
    |||| ||||||||||||||||||||  | |||||| ||||||||||| |||||||    
T  51215440 ctgcagcagaactagcaaatgctcataacttcattagtagtttgcagcaggtaaa 51215494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 326 - 485
Target Start/End: Complemental strand, 49734233 - 49734074
Alignment:
Q  326 atatgcagggctatgacacgatagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatcc 425  Q
    |||||||||| |||||||| |||||||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||    
T  49734233 atatgcaggggtatgacacaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatcc 49734134  T
Q  426 aaaaatactattactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggt 485  Q
    || |||| || ||||||||||||| || ||||||||||||||||||||||| || |||||    
T  49734133 aagaatattactactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggt 49734074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 473
Target Start/End: Original strand, 36288937 - 36289086
Alignment:
Q  324 atatatgcagggctatgacacgatagtaggtgagagaggaattca-attatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaa 422  Q
    |||||||||||||||||||||  | || || ||| ||||| | || |||||| || |||||||||||||||||||||||||| ||||| ||| |||||||    
T  36288937 atatatgcagggctatgacaccgttgtgggggagcgagga-tccagattatcgggtggacagaagcagcgtgtggcaattgcaagagcaatattgaagaa 36289035  T
Q  423 tccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtc 473  Q
    |||||||||| || ||||||||||||| || ||||| ||||||||||||||    
T  36289036 tccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtc 36289086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 36288635 - 36288840
Alignment:
Q  17 ttgatggaatagaaattcaaaggatgcaagtgaaatggctaagacaacagatgggactggtaagccaagagcctattcttttcaatgacacggttcgggc 116  Q
    |||||||||||||||| |||| | | || || |||||| |||| ||| | |||||  ||||||||||||||||| |  | || ||||||||||| || ||    
T  36288635 ttgatggaatagaaatccaaaagcttcaggttaaatggttaaggcaaaaaatgggcttggtaagccaagagcctgtgttgtttaatgacacggtacgagc 36288734  T
Q  117 gaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtagctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaag 216  Q
     ||||| ||||| ||||| |||  |||||||||||| ||||| ||  | ||||| ||| || | |||||||||||| |||||||| ||||||||||| ||    
T  36288735 taatatcgcatatggaaagggaaaagatgcaacagaagcagagatcattgctgcagcaaaaatggcaaatgctcacaagttcattagtagtttgcagcag 36288834  T
Q  217 gtaaat 222  Q
    ||||||    
T  36288835 gtaaat 36288840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 49734678 - 49734523
Alignment:
Q  67 atgggactggtaagccaagagcctattcttttcaatgacacggttcgggcgaatattgcatacggaaaaggaggagatgcaacagaggcagaaattgtag 166  Q
    ||||| ||||||| ||| |||||| | || ||||||||||| || || || || ||||| || |||||||| ||  ||||||| ||||| |||||| |||    
T  49734678 atgggcctggtaacccaggagcctgtgctgttcaatgacaccgtgcgagccaacattgcgtatggaaaaggtggcaatgcaactgaggctgaaattatag 49734579  T
Q  167 ctgcggcagaactagcaaatgctcaccagttcattggtagtttgcagaaggtaaat 222  Q
    |||| ||| |||| |||||||||||  |||||||| | ||||||||| ||||||||    
T  49734578 ctgcagcaaaacttgcaaatgctcataagttcattagcagtttgcagcaggtaaat 49734523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 479
Target Start/End: Original strand, 27727391 - 27727518
Alignment:
Q  352 ggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaa 451  Q
    |||||||||||||| ||||||||||||||||| ||||||||  | |||||  |  | |||||||| || ||||||  ||| || ||| ||||||||||||    
T  27727391 ggtgagagaggaatacaattatctgggggacaaaagcagcgaattgcaatatctcgtgctatagttaaaaatccatcaatccttttattagatgaagcaa 27727490  T
Q  452 ctagtgcacttgatgctgagtctgagaa 479  Q
    |||||||  | ||||| |||||||||||    
T  27727491 ctagtgctttggatgccgagtctgagaa 27727518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 5827236 - 5827312
Alignment:
Q  397 gcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagtc 473  Q
    |||||||| ||||||||| |||| || || | |||||| ||||| ||||| ||||| |||||||| |||||||||||    
T  5827236 gcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaaccagtgcactcgatgctgagtc 5827312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 473
Target Start/End: Complemental strand, 29327205 - 29327103
Alignment:
Q  371 tatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctga 470  Q
    ||||||| ||||||||||||||  | || ||||| ||||| ||  |||| || || |||||||| || || ||||| ||||| |||||||||||||| ||    
T  29327205 tatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttgatgaggcaacaagtgcacttgatgccga 29327106  T
Q  471 gtc 473  Q
    |||    
T  29327105 gtc 29327103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 470
Target Start/End: Complemental strand, 2675160 - 2675124
Alignment:
Q  434 tattactagatgaagcaactagtgcacttgatgctga 470  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  2675160 tattactagatgaagcaacaagtgcacttgattctga 2675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 485
Target Start/End: Complemental strand, 38525381 - 38525269
Alignment:
Q  373 tctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatgaagcaactagtgcacttgatgctgagt 472  Q
    ||||| ||||||||||||||  | || ||||| ||||| ||  | |||||||||| ||| ||| | || |||||||| || |||||||||||||| || |    
T  38525381 tctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaattctacttcttgatgaagctacaagtgcacttgatgcagaat 38525282  T
Q  473 ctgagaaggtggt 485  Q
    |||| | ||||||    
T  38525281 ctgaaagggtggt 38525269  T

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