View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_7 (Length: 489)
Name: NF19065_low_7
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 39554186 - 39554655
Alignment:
| Q |
1 |
tctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554186 |
tctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
39554285 |
T |
|
| Q |
101 |
attgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554286 |
attgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaa |
39554385 |
T |
|
| Q |
201 |
catcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttg |
300 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554386 |
catcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttg |
39554485 |
T |
|
| Q |
301 |
atagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctacttttccaatacacattttggg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39554486 |
atagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctccttttccaatacacattttggg |
39554585 |
T |
|
| Q |
401 |
gactagattaggagaatgtttcactactagtagttgagtatttgccttgtttggtgaataaggtagaagg |
470 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39554586 |
gactagattaggagaatgtttcactactagtagttgagtatttgccttgtttggtgaataaggtagaagg |
39554655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 39544872 - 39545295
Alignment:
| Q |
1 |
tctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39544872 |
tctttggaacaagcttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
39544971 |
T |
|
| Q |
101 |
attgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39544972 |
attgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaa |
39545071 |
T |
|
| Q |
201 |
catcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttg |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39545072 |
catcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttg |
39545171 |
T |
|
| Q |
301 |
atagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctacttttccaatacacattttggg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39545172 |
atagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctccttttccaatacacattttggg |
39545271 |
T |
|
| Q |
401 |
gactagattaggagaatgtttcac |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39545272 |
gactagattaggagaatgtttcac |
39545295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 39587303 - 39587632
Alignment:
| Q |
1 |
tctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||| ||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
39587303 |
tctttggaacaagcttcccttcaatggtttcctctggcttatacaaatcgagagattgcaactcaacatcagcaacagcttcaacaaaatccacaccacg |
39587402 |
T |
|
| Q |
101 |
attgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcataataagaaacaagagcctcagttaaagaatttttcaaa |
200 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||| | || |||||||||||| | || |||||||||||||| |||| ||| ||||||||||| |
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| T |
39587403 |
gttattgcaaagtagctcaggttcacccatggagttagtaaccatttcaccagcaaatacgtagtaagaaacaagagcttcagctaaggaatttttcaag |
39587502 |
T |
|
| Q |
201 |
catcccacaa---tgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggt |
297 |
Q |
| |
|
|| ||||||| || ||| | ||||||| ||||||| |||||||||||||| || ||||||||||||| | ||| |||||||| | ||||||||| | |
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|
| T |
39587503 |
caccccacaatagtgttattggtggtgccaatagtaatcataggatttttgtagcaaaagaacacaccaatactaacagggggaagtagtaaatcaagat |
39587602 |
T |
|
| Q |
298 |
ttgatagtggaagccagtgctcttgcattg |
327 |
Q |
| |
|
||||||||| |||| || |||||||||| |
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|
| T |
39587603 |
ttgatagtgctagcctatgttcttgcattg |
39587632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17507059 - 17507221
Alignment:
| Q |
1 |
tctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
100 |
Q |
| |
|
|||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | ||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
17507059 |
tcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagttcaacatcagcaacagcttcaacaaaatcaacaccacg |
17507158 |
T |
|
| Q |
101 |
attgttgcaaagtaactcaggttcacccatggagttagtcatcacttcaccagcaaaggcata |
163 |
Q |
| |
|
||| || ||||| | |||||||||||||| || || | || |||||||| ||||||||||| |
|
|
| T |
17507159 |
attattacaaagaagctcaggttcacccacagaattggacacaacttcacctgcaaaggcata |
17507221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 17484784 - 17484912
Alignment:
| Q |
1 |
tctttggaacaagtttcccttcaacagtttcatctggattatacaaattgagagattgtaactcaacatcagcaaaagcttcaacaaaatccactccacg |
100 |
Q |
| |
|
|||| ||||||| || |||||||||| |||||| || ||||| |||||||| |||| | |||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
17484784 |
tcttaggaacaaactttccttcaacagattcatcagggttataaaaattgaggcattgaagctcaacatcagcaacagcttcaacaaaatcaacaccacg |
17484883 |
T |
|
| Q |
101 |
attgttgcaaagtaactcaggttcaccca |
129 |
Q |
| |
|
|| || ||||| | |||||||||||||| |
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|
| T |
17484884 |
gttattacaaagaatctcaggttcaccca |
17484912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 17507292 - 17507380
Alignment:
| Q |
240 |
ggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagtgctcttgcattgg |
328 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||| || |||| |||||||||||| || ||||| ||||| || ||||| ||||| |
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|
| T |
17507292 |
ggattcttgtaacaaaagaacacaccaacatccactgcaggtagaagtaaatcaaggttagagagtggtagccaatgttcttgtattgg |
17507380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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