View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_8 (Length: 448)
Name: NF19065_low_8
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 39289784 - 39289364
Alignment:
| Q |
15 |
atggtggtggactaattctacctaataaacctgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaac |
114 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39289784 |
atggtgatggacttattctacctaataaacctgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtac |
39289685 |
T |
|
| Q |
115 |
ttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgatag |
214 |
Q |
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| T |
39289684 |
ttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgatag |
39289585 |
T |
|
| Q |
215 |
gtttttgaacgaggctcgtaacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacat |
314 |
Q |
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|||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289584 |
gtttttgaactaggttcataacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacat |
39289485 |
T |
|
| Q |
315 |
tgtggtggagatgtcgaataactggaaaagctgcgagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289484 |
tgtggtggagatgtcgaataactggaaaagctgcaagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaatt |
39289385 |
T |
|
| Q |
415 |
ggttttgtcgttgcttttgat |
435 |
Q |
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| T |
39289384 |
ggttttgtcgttgcttttgat |
39289364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 39296664 - 39296269
Alignment:
| Q |
15 |
atggtggtggactaattctacctaataaacctgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaac |
114 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39296664 |
atggtgatggacttattctacctaataaacctgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtac |
39296565 |
T |
|
| Q |
115 |
ttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgatag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39296564 |
ttttttaatacttaaccaaggaatcataatgagaattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgatag |
39296465 |
T |
|
| Q |
215 |
gtttttgaacgaggctcgtaacttatagtaagaagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacat |
314 |
Q |
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|||||||||| |||||| |||||| || | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |
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| T |
39296464 |
gtttttgaactaggctcacaacttactgttaaaagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgt |
39296365 |
T |
|
| Q |
315 |
tgtggtggagatgtcgaataactggaaaagctgcgagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaag |
410 |
Q |
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||||||| ||||| ||||||| |||||||||| |||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| |
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| T |
39296364 |
tgtggtgaagatgacgaataaaaggaaaagctgagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag |
39296269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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