View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19066_high_10 (Length: 370)
Name: NF19066_high_10
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19066_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 9783122 - 9783464
Alignment:
| Q |
10 |
atgaaaataaggtaactgacacaaaacccagcttgtgaaagcacaatcatggagtcaacggaaaaacgacctaatgggccacaaatggtgaaacccaaat |
109 |
Q |
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| T |
9783122 |
atgaaaataaggtaactgacacaaaacccagcttgtgaaagcacaatcatggagtcaacggaaaaacgacctaatgggccacaaatggtgaaacccaaat |
9783221 |
T |
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| Q |
110 |
cgccgaaagatttgattttggagaaaccggtgatggattcgagtttccggcgagtgttgacgaggaggagcatgcagtggtaggtgaggtaagcgatggt |
209 |
Q |
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| T |
9783222 |
cgccgaaagatttgattttggagaaaccggtgatggattcgagtttccggcgagtgttgacgaggaggagcatgcagtggtaggtgaggtaagcgatggt |
9783321 |
T |
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| Q |
210 |
gaataggttgatgagaccggtgaggtagccggtgcgtttgaaggagtaagggagaccgagaacgccggcgccgacgatggcgatgaagatgttggcgcag |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9783322 |
aaataggttgatgagaccggtgaggtagccggtgcgtttgaaggagtaagggagaccgagaacgccggcgccgacgatggcgatgaagatgttggcgcag |
9783421 |
T |
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| Q |
310 |
gttttgaattgggaagagannnnnnntgagttagtaagaaggg |
352 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
9783422 |
gttttgaattgggaagagagggggggtgagttagtaagaaggg |
9783464 |
T |
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