View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19066_low_10 (Length: 418)

Name: NF19066_low_10
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19066_low_10
NF19066_low_10
[»] chr1 (2 HSPs)
chr1 (15-403)||(12507388-12507776)
chr1 (15-403)||(12492458-12492846)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 12507388 - 12507776
Alignment:
Q  15 cacagagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgttt 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12507388 cacaaagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcattagttaaatccgttgttt 12507487  T
Q  115 atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507488 atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa 12507587  T
Q  215 gggtgagatgattttcgggtaccaatcttttgctactaaggaccctagggttttcgatgatgctgagatttttgtgccaaagaggtttattggagaaggt 314  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507588 gggtgagatgattttcgggtaccaatcttttgctactaaggatcctagggttttcgatgatgctgagatttttgtgccaaagaggtttattggagaaggt 12507687  T
Q  315 gagaagttgttgaagtatgttttatggtcgaatgggagagaaactgagaagcctagtgtcgataataaacaatgtcctgcgaagaatct 403  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12507688 gagaagttgttgaaatatgttttatggtcgaatgggagagaaactgagaaccctactgtcgataataaacaatgtcctgcgaagaatct 12507776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 12492458 - 12492846
Alignment:
Q  15 cacagagaactcgcaaacgagataagaaccattgtaaaaaacgaaggcggggtaacaattcagtcgttagaaaaaatgtcgttagttaaatccgttgttt 114  Q
    |||| ||||||||||||||||||||||||| | |||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  12492458 cacaaagaactcgcaaacgagataagaaccgtggtaaaacaagaaggcggagtaacaattcagtcgttagaaaaaatgccgttagttaaatcagttgtct 12492557  T
Q  115 atgaagttttgaggattgaacctgtcgttcgttatcaatatgcaaaagcaagagaagatttaattgtgaagagtcacgatgcagcttttgaaattaaaaa 214  Q
    ||||||   || | ||||||||||  || | ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||    
T  12492558 atgaagcgatgcgaattgaacctgctgtgccttatcaatatgcaaaagcaagagaagatttaatcgtgaagagtcacgacgcggcttttgaaataaaaaa 12492657  T
Q  215 gggtgagatgattttcgggtaccaatcttttgctactaaggaccctagggttttcgatgatgctgagatttttgtgccaaagaggtttattggagaaggt 314  Q
    |||||||||||| || || |||||| |||| || || || || |||||||||||||||||| ||||| |||||||| | ||||||||| | || ||||||    
T  12492658 gggtgagatgatatttggataccaacctttcgcgacaaaagatcctagggttttcgatgatcctgaggtttttgtggcgaagaggtttgtcggcgaaggt 12492757  T
Q  315 gagaagttgttgaagtatgttttatggtcgaatgggagagaaactgagaagcctagtgtcgataataaacaatgtcctgcgaagaatct 403  Q
    |||||||| |||||||||||||| ||||| ||||||| |||||||||  |||||  ||| |  |||||||||||||||| |||||||||    
T  12492758 gagaagttattgaagtatgttttgtggtctaatgggaaagaaactgaagagccttctgtggggaataaacaatgtcctgggaagaatct 12492846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University