View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19066_low_12 (Length: 282)

Name: NF19066_low_12
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19066_low_12
NF19066_low_12
[»] chr7 (18 HSPs)
chr7 (13-282)||(48539238-48539504)
chr7 (186-234)||(45974816-45974864)
chr7 (195-238)||(25187144-25187187)
chr7 (187-238)||(19277134-19277185)
chr7 (186-232)||(21327057-21327103)
chr7 (194-234)||(4501109-4501149)
chr7 (195-231)||(32682023-32682059)
chr7 (195-238)||(22197838-22197881)
chr7 (195-238)||(22239940-22239983)
chr7 (195-234)||(45614059-45614098)
chr7 (186-230)||(982791-982835)
chr7 (186-230)||(43334052-43334096)
chr7 (195-230)||(27521322-27521357)
chr7 (195-233)||(19837069-19837107)
chr7 (196-234)||(42295394-42295432)
chr7 (195-232)||(24527435-24527472)
chr7 (185-234)||(41767701-41767750)
chr7 (197-229)||(5972438-5972470)
[»] chr8 (7 HSPs)
chr8 (185-238)||(18804454-18804507)
chr8 (194-238)||(500092-500136)
chr8 (195-238)||(22589549-22589592)
chr8 (196-234)||(24124880-24124918)
chr8 (195-232)||(18596818-18596855)
chr8 (195-232)||(1187411-1187448)
chr8 (194-226)||(24450972-24451004)
[»] chr3 (11 HSPs)
chr3 (186-238)||(53785551-53785603)
chr3 (195-238)||(4764005-4764048)
chr3 (195-238)||(32546646-32546689)
chr3 (198-238)||(44687-44727)
chr3 (195-238)||(52741725-52741768)
chr3 (195-238)||(39661398-39661441)
chr3 (186-252)||(26276452-26276515)
chr3 (195-234)||(44198618-44198657)
chr3 (204-238)||(13582370-13582404)
chr3 (205-234)||(49017828-49017857)
chr3 (186-238)||(21552506-21552558)
[»] scaffold0309 (1 HSPs)
scaffold0309 (187-238)||(5167-5218)
[»] scaffold0009 (1 HSPs)
scaffold0009 (195-238)||(102957-103000)
[»] chr4 (6 HSPs)
chr4 (195-238)||(30940945-30940988)
chr4 (194-234)||(40392771-40392811)
chr4 (195-234)||(600909-600948)
chr4 (195-234)||(16955311-16955350)
chr4 (195-232)||(53170364-53170401)
chr4 (192-230)||(47585229-47585267)
[»] chr2 (15 HSPs)
chr2 (187-238)||(41868120-41868171)
chr2 (197-238)||(3208457-3208498)
chr2 (193-233)||(42122666-42122706)
chr2 (192-238)||(4413279-4413325)
chr2 (186-235)||(1472337-1472386)
chr2 (194-235)||(2248492-2248533)
chr2 (193-234)||(13413200-13413241)
chr2 (186-238)||(17344480-17344532)
chr2 (195-238)||(18745167-18745210)
chr2 (186-226)||(5536691-5536731)
chr2 (186-230)||(20143166-20143210)
chr2 (195-238)||(2886829-2886872)
chr2 (195-238)||(4849676-4849719)
chr2 (195-230)||(15515368-15515403)
chr2 (195-227)||(34360368-34360400)
[»] chr1 (13 HSPs)
chr1 (187-238)||(21472846-21472897)
chr1 (197-238)||(7213096-7213137)
chr1 (194-238)||(868614-868658)
chr1 (194-238)||(1114081-1114125)
chr1 (186-230)||(19035321-19035365)
chr1 (198-238)||(24177724-24177764)
chr1 (200-234)||(22346751-22346785)
chr1 (194-230)||(31737543-31737579)
chr1 (195-234)||(28041344-28041383)
chr1 (195-238)||(44270008-44270051)
chr1 (195-238)||(45835398-45835441)
chr1 (194-226)||(28493556-28493588)
chr1 (195-231)||(29170404-29170440)
[»] chr6 (3 HSPs)
chr6 (195-238)||(45834-45877)
chr6 (197-232)||(2135023-2135058)
chr6 (195-230)||(34562398-34562433)
[»] scaffold0148 (1 HSPs)
scaffold0148 (186-238)||(33092-33144)
[»] chr5 (7 HSPs)
chr5 (195-238)||(15292238-15292281)
chr5 (195-238)||(26212796-26212839)
chr5 (186-231)||(42921540-42921585)
chr5 (198-234)||(14423545-14423581)
chr5 (195-235)||(32270012-32270052)
chr5 (195-226)||(15507566-15507597)
chr5 (193-227)||(38875492-38875526)
[»] scaffold0075 (1 HSPs)
scaffold0075 (189-234)||(13304-13349)
[»] scaffold0406 (1 HSPs)
scaffold0406 (206-238)||(6750-6782)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 48539504 - 48539238
Alignment:
Q  13 ataacttttgcagttaataataatatgctannnnnnncataacaaatctcaacatacaataaacccttcaaacagtttgccttttcctttgatgtgtgtt 112  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48539504 ataacttttgcagttaataataatatgctatttttttcataacaaatctcaacatacaataaacccttcaaacagtttgccttttcctt-gatgtgtgtt 48539406  T
Q  113 atagtttctaaggaaggtagatcagacataagatagtttaatagttagggagatatgcaagatatctaatttaatatataattatataaaccattattta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48539405 atagtttctaaggaaggtagatcagacataagatagtttaatagttagggagataggcaagatatctaatttaatatataattatataaaccattattta 48539306  T
Q  213 cacttgaatagaaggcaagcgggcaagcgggcaacaagctgtgccgctgacaatcaacatgcttttatac 282  Q
    |||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||    
T  48539305 cacttgaatagaaggcaagcggg--ggcgggcaacaagttgtgccgctgacaatcaacatgcttttatac 48539238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 45974864 - 45974816
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45974864 atatataattatataaaccattatttacacttgaatagaagacaagcgg 45974816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 25187187 - 25187144
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25187187 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 25187144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 19277134 - 19277185
Alignment:
Q  187 tatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  19277134 tatatatttatataaaccattatttacatttgaatagaaggcaggcgggcaa 19277185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 21327103 - 21327057
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagc 232  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||    
T  21327103 atatatatatatataaaccattatttacacttgaatagaaggcaagc 21327057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 4501109 - 4501149
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  4501109 ttatataaaccattatttacacttgaatataaggcaagcgg 4501149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 32682059 - 32682023
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaag 231  Q
    |||||||||||||||||||||||||||||||||||||    
T  32682059 tatataaaccattatttacacttgaatagaaggcaag 32682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 22197838 - 22197881
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  22197838 tatataaaccattatttactcttgaatagaagacaagcgggcaa 22197881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 22239983 - 22239940
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  22239983 tatataaaccattatttactcttgaatagaagacaagcgggcaa 22239940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 45614098 - 45614059
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  45614098 tatataaaccattatttacagttgaatagaaggcaagcgg 45614059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 982791 - 982835
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaa 230  Q
    |||||||  |||||||||||||||||| |||||||||||||||||    
T  982791 atatatatatatataaaccattatttaaacttgaatagaaggcaa 982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 43334096 - 43334052
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaa 230  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||    
T  43334096 atatatatatatataaaccattatttacacttgaatagaatgcaa 43334052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 27521322 - 27521357
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaa 230  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27521322 tatataaaccattatttacacttgaatggaaggcaa 27521357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 19837069 - 19837107
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcg 233  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  19837069 tatataaaccattatttaaacttaaatagaaggcaagcg 19837107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 42295432 - 42295394
Alignment:
Q  196 atataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  42295432 atataaaccattatttatatttgaatagaaggcaagcgg 42295394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 24527435 - 24527472
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagc 232  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  24527435 tatataaatcattatttacacttgaataaaaggcaagc 24527472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 41767750 - 41767701
Alignment:
Q  185 aatatataattatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||  |||||| | ||||||||||| |||||||||||||||||||    
T  41767750 aatatatatatatatatatcattatttacatttgaatagaaggcaagcgg 41767701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 5972470 - 5972438
Alignment:
Q  197 tataaaccattatttacacttgaatagaaggca 229  Q
    ||||||| |||||||||||||||||||||||||    
T  5972470 tataaactattatttacacttgaatagaaggca 5972438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 18804454 - 18804507
Alignment:
Q  185 aatatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18804454 aatatataattatataaaccattatttacacttgaatagaaggcaagcaggcaa 18804507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 500092 - 500136
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  500092 ttatataaaccattatttacacttgaatagaaggcaagcgggcaa 500136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 22589592 - 22589549
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  22589592 tatataaaccattatttacacttgaataaaaggcaagcgggcaa 22589549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 24124880 - 24124918
Alignment:
Q  196 atataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24124880 atataaaccattatttacacttgaatagaaggcaagcgg 24124918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 18596855 - 18596818
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagc 232  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18596855 tatataaaccattatttacacttgaatagaaggcaagc 18596818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 1187448 - 1187411
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagc 232  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  1187448 tatataaacaattatttacacttgaatagaaggcaagc 1187411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 24450972 - 24451004
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaag 226  Q
    ||||||||||||||||||||| |||||||||||    
T  24450972 ttatataaaccattatttacaattgaatagaag 24451004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 53785551 - 53785603
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  53785551 atatatatatatataaaccattatttacacttgaatagaaggcaagcgggcaa 53785603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 4764048 - 4764005
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4764048 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 4764005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 32546646 - 32546689
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32546646 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 32546689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 44687 - 44727
Alignment:
Q  198 ataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44687 ataaaccattatttacacttgaatagaaggcaagcgggcaa 44727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 52741768 - 52741725
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  52741768 tatataaaccattatttacacttgaatagaaggcgagcgggcaa 52741725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 39661441 - 39661398
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  39661441 tatataaaccattatttacacttgaatagaaagcacgcgggcaa 39661398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 26276452 - 26276515
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcgggcaagcgggcaacaagct 252  Q
    |||||||  ||||||||||||||||||||||||||| ||||  ||   |||||||||||||||||||    
T  26276452 atatatatatatataaaccattatttacacttgaattgaagtgaa---ggcaagcgggcaacaagct 26276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 44198618 - 44198657
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  44198618 tatataaattattatttacacttgaatagaaggcaagcgg 44198657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 13582370 - 13582404
Alignment:
Q  204 cattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||| |||||||||||||||||||||||||    
T  13582370 cattatttagacttgaatagaaggcaagcgggcaa 13582404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 49017828 - 49017857
Alignment:
Q  205 attatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||||||||||||||||    
T  49017828 attatttacacttgaatagaaggcaagcgg 49017857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 21552506 - 21552558
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||  |||||| | |||||||||||||||||||||||| || |||||||    
T  21552506 atatatatatatatatatcattatttacacttgaatagaaggtaaacgggcaa 21552558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 5167 - 5218
Alignment:
Q  187 tatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  5167 tatatatttatataaaccattatttacacttgaatagaatgcaagcgggcaa 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 102957 - 103000
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  102957 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 103000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 30940988 - 30940945
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30940988 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 30940945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 40392811 - 40392771
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40392811 ttatataaaccattatttacacttgaatagaaggcaagcgg 40392771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 600948 - 600909
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  600948 tatataaacaattatttacacttgaatagaaggcaagcgg 600909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 16955311 - 16955350
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  16955311 tatataaaccattatttacacttgagtagaaggcaagcgg 16955350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 53170364 - 53170401
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagc 232  Q
    |||||||||||||||||||| |||||||||||||||||    
T  53170364 tatataaaccattatttacatttgaatagaaggcaagc 53170401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 47585267 - 47585229
Alignment:
Q  192 aattatataaaccattatttacacttgaatagaaggcaa 230  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  47585267 aattatataaactattatttacatttgaatagaaggcaa 47585229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 41868171 - 41868120
Alignment:
Q  187 tatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  41868171 tatatatttatataaaccattatttacacttgaatagaaagcaagcgggcaa 41868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 3208498 - 3208457
Alignment:
Q  197 tataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3208498 tataaaccattatttacacttgaatagaaggcaagcgggcaa 3208457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 42122666 - 42122706
Alignment:
Q  193 attatataaaccattatttacacttgaatagaaggcaagcg 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42122666 attatataaaccattatttacacttgaatagaaggcaagcg 42122706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 4413325 - 4413279
Alignment:
Q  192 aattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  4413325 aattatataaacaattatttacacttgaatagaaggcaagtgggcaa 4413279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 1472337 - 1472386
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcggg 235  Q
    |||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  1472337 atatatatatatataaaccattatttacacttgaatagaaggcaaacggg 1472386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 2248492 - 2248533
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaagcggg 235  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  2248492 ttatataaaccattatttacacttgaacagaaggcaagcggg 2248533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 13413200 - 13413241
Alignment:
Q  193 attatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  13413200 attatataaaccattatttacacttgaatagaagacaagcgg 13413241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 17344480 - 17344532
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||| |||||    
T  17344480 atatatatatatataaatcattatttacacttgaatagaaggcaagccggcaa 17344532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 18745210 - 18745167
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||| |||||| ||||    
T  18745210 tatataaaccattatttacacttgaatagaagacaagcgagcaa 18745167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 5536691 - 5536731
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaag 226  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  5536691 atatatatatatataaaccattatttacacttgaatagaag 5536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 20143210 - 20143166
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaa 230  Q
    |||||||  |||||||||||||||||||| |||||||||||||||    
T  20143210 atatatatatatataaaccattatttacatttgaatagaaggcaa 20143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 2886872 - 2886829
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||  ||||| |||||    
T  2886872 tatataaaccattatttacacttgaatagaatacaagcaggcaa 2886829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 4849676 - 4849719
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||    
T  4849676 tatataaatcattatttacacttgaatagaaggtaagtgggcaa 4849719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 15515403 - 15515368
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaa 230  Q
    ||||||||||||||||||||||||| ||||||||||    
T  15515403 tatataaaccattatttacacttgagtagaaggcaa 15515368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 34360368 - 34360400
Alignment:
Q  195 tatataaaccattatttacacttgaatagaagg 227  Q
    ||||||||| |||||||||||||||||||||||    
T  34360368 tatataaactattatttacacttgaatagaagg 34360400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 21472846 - 21472897
Alignment:
Q  187 tatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  21472846 tatatatttatataaaccattatttacacttgaatagaatgcaagcgggcaa 21472897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 7213096 - 7213137
Alignment:
Q  197 tataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7213096 tataaaccattatttacacttgaatagaaggcaagcgggcaa 7213137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 868658 - 868614
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  868658 ttatataaacaattatttacacttgaatagaaggcaagcgggcaa 868614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 1114125 - 1114081
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  1114125 ttatataaaccattatttacacttgaatagaagccaagcgggcaa 1114081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 19035321 - 19035365
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaa 230  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  19035321 atatatatatatataaaccattatttacacttgaatagaaggcaa 19035365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 24177764 - 24177724
Alignment:
Q  198 ataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  24177764 ataaaccattatttacacttgaatagaagacaagcgggcaa 24177724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 22346751 - 22346785
Alignment:
Q  200 aaaccattatttacacttgaatagaaggcaagcgg 234  Q
    |||||||||||||||||||||||||||||||||||    
T  22346751 aaaccattatttacacttgaatagaaggcaagcgg 22346785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 31737579 - 31737543
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaaggcaa 230  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31737579 ttatataaacaattatttacacttgaatagaaggcaa 31737543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 28041383 - 28041344
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  28041383 tatataaaccattatttacacttaaatagaagacaagcgg 28041344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 44270008 - 44270051
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||    
T  44270008 tatataaaccattatttacatttgaataaaagacaagcgggcaa 44270051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 45835441 - 45835398
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||||| | || |||||||    
T  45835441 tatataaaccattatttacacttgaatagaaaggaaacgggcaa 45835398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 28493588 - 28493556
Alignment:
Q  194 ttatataaaccattatttacacttgaatagaag 226  Q
    ||||||||| |||||||||||||||||||||||    
T  28493588 ttatataaatcattatttacacttgaatagaag 28493556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 29170440 - 29170404
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaag 231  Q
    ||||||||  |||||||||||||||||||||||||||    
T  29170440 tatataaattattatttacacttgaatagaaggcaag 29170404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 45877 - 45834
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  45877 tatataaaccattatttacacttgaataggaggcaagcgggcaa 45834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 2135058 - 2135023
Alignment:
Q  197 tataaaccattatttacacttgaatagaaggcaagc 232  Q
    |||||||||||||||||| |||||||||||||||||    
T  2135058 tataaaccattatttacaattgaatagaaggcaagc 2135023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 34562433 - 34562398
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaa 230  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34562433 tatataaactattatttacacttgaatagaaggcaa 34562398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 33092 - 33144
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||| |||||    
T  33092 atatatatatatatacaccattatttacacttgaatagaaggcaagcaggcaa 33144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 15292281 - 15292238
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  15292281 tatataaaccattatttatacttgaatagaaggcaagtgggcaa 15292238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 26212839 - 26212796
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  26212839 tatataaatcattatttacacttgaatagaaagcaagcgggcaa 26212796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 42921540 - 42921585
Alignment:
Q  186 atatataattatataaaccattatttacacttgaatagaaggcaag 231  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||    
T  42921540 atatatatatatataaatcattatttacacttgaatagaaggcaag 42921585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 14423545 - 14423581
Alignment:
Q  198 ataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    ||||||||||||||||||||||||| |||||||||||    
T  14423545 ataaaccattatttacacttgaataaaaggcaagcgg 14423581  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 32270052 - 32270012
Alignment:
Q  195 tatataaaccattatttacacttgaatagaaggcaagcggg 235  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  32270052 tatataaaatattatttacacttgaatagaaggcaagcggg 32270012  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 226
Target Start/End: Complemental strand, 15507597 - 15507566
Alignment:
Q  195 tatataaaccattatttacacttgaatagaag 226  Q
    ||||||||||||||||||||||||||||||||    
T  15507597 tatataaaccattatttacacttgaatagaag 15507566  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 38875492 - 38875526
Alignment:
Q  193 attatataaaccattatttacacttgaatagaagg 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  38875492 attatataaatcattatttacacttgaatagaagg 38875526  T

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Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 13304 - 13349
Alignment:
Q  189 tataattatataaaccattatttacacttgaatagaaggcaagcgg 234  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||    
T  13304 tatatttatataaaccattatttacatttgaatagaaagcaagcgg 13349  T

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Target: scaffold0406 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 6750 - 6782
Alignment:
Q  206 ttatttacacttgaatagaaggcaagcgggcaa 238  Q
    |||||||||||||||||||||||||||||||||    
T  6750 ttatttacacttgaatagaaggcaagcgggcaa 6782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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