View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19066_low_13 (Length: 243)
Name: NF19066_low_13
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19066_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8824841 - 8824611
Alignment:
| Q |
1 |
gccagagaaatgaagggtacatgtccttatttttgctaggaaacgattggaccatatttattgtatgtgtttggtatagtnnnnnnngacatatgtatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8824841 |
gccagagaaatgaagggtacatgtccttatttttgctaggaaacgattggaccatatttattgtatgtgtttggtatagtaaaaaaagacatatgtatgg |
8824742 |
T |
|
| Q |
101 |
ttgggaggtgatagtgcatccctcatttacttctgagatttgcatttatttcaactttattttacatgttatgtggacttgaatagcaagcacataaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8824741 |
ttgggaggtgatagtgcatccctcatttacttctgagatttgcatttatttcaactttattttacatgttatgtggacttgaatagcaagcacataaaga |
8824642 |
T |
|
| Q |
201 |
cctggctcatagttaatgcatagggcagtat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8824641 |
cctggctcatagttaatgcatagggcagtat |
8824611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University