View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19066_low_14 (Length: 240)

Name: NF19066_low_14
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19066_low_14
NF19066_low_14
[»] chr3 (28 HSPs)
chr3 (52-240)||(8824851-8825037)
chr3 (52-115)||(28529373-28529436)
chr3 (52-117)||(41451888-41451953)
chr3 (52-116)||(24734827-24734891)
chr3 (52-116)||(37776697-37776761)
chr3 (52-112)||(52123954-52124014)
chr3 (52-116)||(20791418-20791482)
chr3 (52-115)||(5452057-5452120)
chr3 (52-103)||(20493452-20493503)
chr3 (74-117)||(22606909-22606952)
chr3 (52-115)||(43016535-43016598)
chr3 (52-109)||(18427153-18427208)
chr3 (52-117)||(48351558-48351623)
chr3 (52-117)||(50156653-50156718)
chr3 (5-53)||(7640732-7640780)
chr3 (7-51)||(53655401-53655445)
chr3 (7-50)||(214033-214076)
chr3 (57-111)||(214036-214090)
chr3 (52-110)||(15790370-15790428)
chr3 (57-111)||(55283182-55283236)
chr3 (57-110)||(27243047-27243100)
chr3 (52-109)||(27243168-27243225)
chr3 (8-49)||(34706578-34706619)
chr3 (52-117)||(46450188-46450252)
chr3 (52-116)||(29588727-29588791)
chr3 (79-123)||(40631182-40631226)
chr3 (52-100)||(46161069-46161117)
chr3 (69-117)||(55283102-55283150)
[»] chr4 (27 HSPs)
chr4 (52-117)||(43771248-43771313)
chr4 (52-117)||(26361301-26361366)
chr4 (52-115)||(49242292-49242355)
chr4 (52-115)||(8109078-8109141)
chr4 (52-115)||(39471279-39471342)
chr4 (58-117)||(19447260-19447319)
chr4 (52-111)||(22542503-22542562)
chr4 (52-115)||(47009311-47009374)
chr4 (52-104)||(722279-722331)
chr4 (52-103)||(754587-754638)
chr4 (7-54)||(37586457-37586504)
chr4 (52-115)||(43124509-43124572)
chr4 (52-118)||(38537505-38537571)
chr4 (52-111)||(24834700-24834759)
chr4 (52-115)||(34129395-34129458)
chr4 (59-118)||(35179740-35179798)
chr4 (52-115)||(49077371-49077434)
chr4 (52-115)||(50164517-50164580)
chr4 (57-115)||(27654474-27654532)
chr4 (52-97)||(37050641-37050686)
chr4 (57-97)||(5994993-5995033)
chr4 (69-117)||(11127858-11127905)
chr4 (52-116)||(24938409-24938473)
chr4 (7-47)||(27654478-27654518)
chr4 (52-111)||(34961771-34961828)
chr4 (52-100)||(37451023-37451071)
chr4 (15-51)||(40662070-40662106)
[»] chr7 (24 HSPs)
chr7 (52-114)||(46517413-46517475)
chr7 (52-115)||(22190061-22190124)
chr7 (52-116)||(32212864-32212928)
chr7 (52-110)||(6580002-6580060)
chr7 (52-117)||(39254205-39254270)
chr7 (52-117)||(48374432-48374497)
chr7 (52-120)||(27949395-27949463)
chr7 (52-112)||(44350800-44350860)
chr7 (52-117)||(6442287-6442352)
chr7 (52-115)||(11824193-11824254)
chr7 (52-116)||(27888404-27888468)
chr7 (52-114)||(7775121-7775183)
chr7 (52-114)||(25686831-25686893)
chr7 (7-55)||(2520626-2520674)
chr7 (7-55)||(2911754-2911802)
chr7 (52-112)||(11692301-11692361)
chr7 (52-111)||(31628121-31628180)
chr7 (52-103)||(32205198-32205249)
chr7 (7-50)||(37490044-37490087)
chr7 (52-114)||(7459465-7459527)
chr7 (52-116)||(14795253-14795315)
chr7 (52-116)||(15242245-15242307)
chr7 (52-117)||(17749817-17749882)
chr7 (52-117)||(24539115-24539180)
[»] chr6 (13 HSPs)
chr6 (52-117)||(1392749-1392814)
chr6 (52-117)||(34905458-34905523)
chr6 (52-119)||(16851964-16852031)
chr6 (52-112)||(5106420-5106480)
chr6 (52-96)||(12780773-12780817)
chr6 (52-116)||(21987414-21987478)
chr6 (52-103)||(10133165-10133216)
chr6 (52-117)||(16187427-16187490)
chr6 (7-53)||(29610376-29610422)
chr6 (52-117)||(16436186-16436251)
chr6 (7-52)||(25326827-25326872)
chr6 (7-52)||(26159362-26159407)
chr6 (52-88)||(445940-445976)
[»] chr8 (23 HSPs)
chr8 (52-116)||(16983516-16983580)
chr8 (52-112)||(34861190-34861250)
chr8 (55-108)||(5980004-5980057)
chr8 (52-116)||(1977167-1977231)
chr8 (52-111)||(13407322-13407381)
chr8 (52-106)||(24055929-24055983)
chr8 (52-116)||(9952752-9952815)
chr8 (7-51)||(24683713-24683757)
chr8 (74-117)||(1961402-1961445)
chr8 (52-111)||(5095759-5095818)
chr8 (52-111)||(6098776-6098835)
chr8 (52-115)||(8903974-8904037)
chr8 (54-117)||(9193506-9193569)
chr8 (61-115)||(11574160-11574214)
chr8 (7-53)||(38091492-38091538)
chr8 (52-116)||(17499229-17499291)
chr8 (54-111)||(35151728-35151785)
chr8 (69-117)||(24683566-24683614)
chr8 (52-116)||(28413864-28413927)
chr8 (6-54)||(30085517-30085565)
chr8 (52-116)||(36804833-36804897)
chr8 (56-115)||(39023506-39023563)
chr8 (7-51)||(45525015-45525059)
[»] chr1 (27 HSPs)
chr1 (52-117)||(39974193-39974258)
chr1 (52-115)||(8899136-8899199)
chr1 (52-112)||(6133623-6133683)
chr1 (52-102)||(25543461-25543511)
chr1 (52-110)||(26980262-26980320)
chr1 (57-102)||(7548746-7548791)
chr1 (52-120)||(12767318-12767386)
chr1 (52-115)||(15928677-15928738)
chr1 (7-47)||(18473650-18473690)
chr1 (52-116)||(19101595-19101659)
chr1 (52-119)||(30678902-30678969)
chr1 (57-111)||(26980387-26980441)
chr1 (57-111)||(32848708-32848762)
chr1 (72-117)||(1093062-1093107)
chr1 (52-117)||(16948522-16948587)
chr1 (71-116)||(22540505-22540550)
chr1 (84-117)||(28218039-28218072)
chr1 (7-52)||(39019571-39019616)
chr1 (52-117)||(41948139-41948204)
chr1 (52-116)||(8741217-8741281)
chr1 (23-51)||(11458450-11458478)
chr1 (52-116)||(21466614-21466678)
chr1 (52-92)||(33193172-33193212)
chr1 (15-51)||(33233986-33234022)
chr1 (59-115)||(36567019-36567075)
chr1 (52-99)||(37552962-37553007)
chr1 (63-115)||(39019700-39019752)
[»] scaffold0194 (1 HSPs)
scaffold0194 (52-116)||(8405-8469)
[»] scaffold0018 (1 HSPs)
scaffold0018 (52-115)||(27934-27997)
[»] chr5 (21 HSPs)
chr5 (52-117)||(1923545-1923610)
chr5 (52-117)||(37455470-37455539)
chr5 (52-103)||(28490729-28490780)
chr5 (7-53)||(1649545-1649591)
chr5 (7-52)||(25001999-25002044)
chr5 (52-117)||(41105563-41105628)
chr5 (52-107)||(28223779-28223834)
chr5 (6-51)||(20526751-20526796)
chr5 (52-101)||(30325883-30325932)
chr5 (7-48)||(33854106-33854147)
chr5 (52-119)||(12076053-12076120)
chr5 (52-119)||(28434813-28434876)
chr5 (14-51)||(32309477-32309514)
chr5 (72-117)||(36337880-36337925)
chr5 (52-115)||(41330390-41330451)
chr5 (57-117)||(4959273-4959333)
chr5 (69-117)||(8622910-8622958)
chr5 (52-88)||(25710494-25710530)
chr5 (65-109)||(26072106-26072150)
chr5 (60-100)||(34384701-34384741)
chr5 (7-51)||(41034424-41034468)
[»] chr2 (21 HSPs)
chr2 (52-109)||(12989313-12989370)
chr2 (52-117)||(26767754-26767819)
chr2 (52-117)||(32856128-32856193)
chr2 (59-119)||(6980111-6980171)
chr2 (52-112)||(45554681-45554741)
chr2 (15-54)||(18949342-18949381)
chr2 (52-115)||(19639215-19639278)
chr2 (52-115)||(19837808-19837871)
chr2 (7-53)||(42669869-42669915)
chr2 (52-117)||(9470203-9470267)
chr2 (52-109)||(38464285-38464342)
chr2 (52-117)||(43400256-43400321)
chr2 (57-117)||(6315786-6315846)
chr2 (52-120)||(15884551-15884619)
chr2 (7-51)||(19193497-19193541)
chr2 (15-54)||(19193650-19193689)
chr2 (7-53)||(35523378-35523424)
chr2 (52-116)||(12098862-12098924)
chr2 (9-54)||(35523488-35523533)
chr2 (52-117)||(44274356-44274421)
chr2 (57-101)||(19193628-19193672)
[»] scaffold0016 (1 HSPs)
scaffold0016 (53-114)||(204704-204765)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 8825037 - 8824851
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttctataaaatttcactatttaaaaatagagaatgc 151  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  8825037 ttaaaccaataagagagtgagtattaaagagagtgttcaaaacagaatgttgcta--attactcttctataaaatttcactatttaaaaatagagaatgc 8824940  T
Q  152 atttccgaggatggctgtaattgattgcactgaaccacaatggtccttattggcaactgcataggtccacatgagagagggtcactcaa 240  Q
    |||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8824939 atttccgaggatggttgtaattgattgtactgaatcacaatagtccttattggcaactgcataggtccacatgagagagggtcactcaa 8824851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 28529373 - 28529436
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  28529373 ttaaaccaataagagagtgagtattagagagggtgttcaaaagagagtgttgttaacattactc 28529436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 41451953 - 41451888
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| |||||    
T  41451953 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcattgctctt 41451888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 24734827 - 24734891
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| ||||    
T  24734827 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcattgctct 24734891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 37776761 - 37776697
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||| ||||||| ||||||||| |||||||||||| || ||||||||| ||||||||||||    
T  37776761 ttaaaccactaagagagtgagtattagagagggtgttcataaaagagtgttgctagcattactct 37776697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 52124014 - 52123954
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    |||||||||||||| | ||||||||| |||| |||||||||||||||||||| ||||||||    
T  52124014 ttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagcatta 52123954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 20791418 - 20791482
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||| | ||||||||| |||| ||||||||||||||||| || ||||| ||||||    
T  20791418 ttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtggtgctagcactactct 20791482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 5452120 - 5452057
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||| ||||||||||  |||||||  |||| |||||||||||||||||||| |||||||||||    
T  5452120 ttaaatcaataagagagcgagtattggagagagtgttcaaaagagagtgttgctagcattactc 5452057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 20493503 - 20493452
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttg 103  Q
    |||||||||||||||| |||||| || |||| ||||||||||||||||||||    
T  20493503 ttaaaccaataagagagtgagtaatagagagagtgttcaaaagagagtgttg 20493452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 22606909 - 22606952
Alignment:
Q  74 attaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||| |||||||||| ||||||||||||||||||||||||||||    
T  22606909 attagagagggtgtttaaaagagagtgttgttagcattactctt 22606952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 43016535 - 43016598
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||| |||||||||| ||||||||| || |||||||||||| ||||||||  |||||||||||    
T  43016535 ttaaatcaataagagagtgagtattacagtgggtgttcaaaatagagtgtttctagcattactc 43016598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 18427208 - 18427153
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagca 109  Q
    |||||||||||||||| ||||||||| |||||||||||  |||||||||||| |||||    
T  18427208 ttaaaccaataagagagtgagtattagagagggtgttc--aagagagtgttgctagca 18427153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 48351558 - 48351623
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||| ||||||||||| |||||||| |||   ||||||||||||| ||| |||||||||||||||    
T  48351558 ttaaatcaataagagaaagagtattagagaaaatgttcaaaagagaatgtcgttagcattactctt 48351623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 50156718 - 50156653
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| | || |||||||||||| ||||| | || ||||||||||    
T  50156718 ttaaaccaataagagagtgagtattacaaagagtgttcaaaagaaagtgtcgataacattactctt 50156653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 7640732 - 7640780
Alignment:
Q  5 caagtgttggagagagtgttgaaaagagagtgtctctaacattcctctt 53  Q
    |||||||| ||| ||||||||||||||||||||| ||| ||||||||||    
T  7640732 caagtgttagagtgagtgttgaaaagagagtgtccctagcattcctctt 7640780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 53655445 - 53655401
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||    
T  53655445 agtgttggagagagtgttgaaaagagaatgtccctagcattcctc 53655401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 214076 - 214033
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcct 50  Q
    ||||||| ||||||||||||||||||||||||| || |||||||    
T  214076 agtgttgaagagagtgttgaaaagagagtgtctttagcattcct 214033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 214090 - 214036
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    ||||||||||||||||| || ||||| ||||| ||||||||||||  ||||||||    
T  214090 ccaataagagaatgagtgttgaagagagtgttgaaaagagagtgtctttagcatt 214036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 15790428 - 15790370
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcat 110  Q
    |||||||||||||||| ||||||||| ||||  | ||||||| ||||||||| ||||||    
T  15790428 ttaaaccaataagagagtgagtattagagagattattcaaaaaagagtgttgctagcat 15790370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 55283182 - 55283236
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    ||||||| ||||| ||| |||||||| ||||| ||||| ||||||||||||||||    
T  55283182 ccaataatagaataagtgttaaagagagtgtttaaaagtgagtgttgttagcatt 55283236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 27243100 - 27243047
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcat 110  Q
    ||||||| ||| ||||| ||| |||| |||||||||||||||||||| ||||||    
T  27243100 ccaataaaagagtgagtgttagagagagtgttcaaaagagagtgttgctagcat 27243047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 27243168 - 27243225
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagca 109  Q
    |||| ||||| ||||| ||||||||| | || |||||||||||||||||||| |||||    
T  27243168 ttaacccaatgagagagtgagtattagaaagagtgttcaaaagagagtgttgctagca 27243225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 34706619 - 34706578
Alignment:
Q  8 gtgttggagagagtgttgaaaagagagtgtctctaacattcc 49  Q
    |||||||||| |||||| ||||||||||||||||| ||||||    
T  34706619 gtgttggagatagtgttcaaaagagagtgtctctagcattcc 34706578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 46450188 - 46450252
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| |||| ||||| |||| |||| |||| ||||| |||||||    
T  46450188 ttaaaccaataagagagtgagtattagagagagtgtt-aaaatagagcgttgctagcactactctt 46450252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 29588791 - 29588727
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    ||||| |||||||||| ||||| ||| |||| |||||||||||||| | ||  ||||||||||||    
T  29588791 ttaaatcaataagagagtgagtgttatagagagtgttcaaaagagaattttactagcattactct 29588727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 40631226 - 40631182
Alignment:
Q  79 agagggtgttcaaaagagagtgttgttagcattactcttctataa 123  Q
    |||| ||||| ||||| |||||||||||||||||||||| |||||    
T  40631226 agagtgtgttgaaaagtgagtgttgttagcattactcttgtataa 40631182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 46161069 - 46161117
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtg 100  Q
    |||||||||||||||| ||||||||| |||| |||| ||| ||||||||    
T  46161069 ttaaaccaataagagagtgagtattagagagagtgtccaagagagagtg 46161117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 55283150 - 55283102
Alignment:
Q  69 tgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||| ||||  |||| |||| |||||||||||||||||||||||    
T  55283150 tgagtattagagagaatgtttaaaaaagagtgttgttagcattactctt 55283102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 43771248 - 43771313
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  43771248 ttaaaccaataagagagtgagtattaaagagggtgttcaaaagagagcgttgctagcattactctt 43771313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 26361366 - 26361301
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  26361366 ttaaaccaataagtgagtgagtattagagagggtgttcaaaagagagtgttgctagcattactctt 26361301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 49242292 - 49242355
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||    
T  49242292 ttaaaccaataagagaatgagtatcatagagagtgtttaaaagagagtgttgttagcattactc 49242355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 8109078 - 8109141
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||| | ||||||||| |||| |||||||||||||||||||| |||||||||||    
T  8109078 ttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgttgctagcattactc 8109141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 39471279 - 39471342
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| ||||||||| ||||  |||| ||||||||||||||||||||||||||    
T  39471279 ttaaaccaataagagagtgagtattagagagaatgtttaaaagagagtgttgttagcattactc 39471342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 19447260 - 19447319
Alignment:
Q  58 caataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  19447260 caattagagagtgagtattaaagagagtgttcaaaagagagtgttgctagcactactctt 19447319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 22542503 - 22542562
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||||| ||||||||| ||||||||||| || |||||||||||| |||||||||||||||    
T  22542503 ttaaactaataagagagtgagtattaaaaagagtgttcaaaagatagtgttgttagcatt 22542562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 47009311 - 47009374
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||| ||||| |||| ||||||    
T  47009311 ttaaaccaataagaaagtgagtattagagagggtgttcaaaagagaatgttgctagcgttactc 47009374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 722279 - 722331
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgt 104  Q
    |||||||||||||||| ||||||||| |||| |||||||||||| ||||||||    
T  722279 ttaaaccaataagagagtgagtattagagagagtgttcaaaagaaagtgttgt 722331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 754638 - 754587
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttg 103  Q
    |||||||||||||||| ||||||||| |||| |||||||||||| |||||||    
T  754638 ttaaaccaataagagagtgagtattagagagagtgttcaaaagaaagtgttg 754587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 37586504 - 37586457
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctctta 54  Q
    |||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  37586504 agtgttggagagagtgttgaaaagagggtgtccctagcattcctctta 37586457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 43124572 - 43124509
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| || |||||| | || ||||||||| || |||||||||||||||||||    
T  43124572 ttaaaccaataagagagtgcgtattataaagagtgttcaaaggaaagtgttgttagcattactc 43124509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 38537571 - 38537505
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttc 118  Q
    ||||| |||||| ||||||| ||||| |||| |||||||||||| ||||||| || |||||||||||    
T  38537571 ttaaatcaataaaagaatgattattagagagagtgttcaaaagaaagtgttgctaacattactcttc 38537505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 24834700 - 24834759
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||||||||||||||| ||| ||||| |||| | ||| |||||||||||||| |||||||    
T  24834700 ttaaaccaataagagagtgactattagagagagagtttaaaagagagtgttgctagcatt 24834759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 34129458 - 34129395
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||| ||| ||||||||| |||  ||||||| ||||||||||||  ||||||||||    
T  34129458 ttaaaccaataaaagagtgagtattagagattgtgttcagaagagagtgttgccagcattactc 34129395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 35179740 - 35179798
Alignment:
Q  59 aataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttc 118  Q
    ||||| ||| ||| |||||||||  |||| ||||||||||||||||||||||||||||||    
T  35179740 aataatagagtgaatattaaagatagtgt-caaaagagagtgttgttagcattactcttc 35179798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 49077371 - 49077434
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||  |||||| | |||| |||||| |||||||||||||  |||||||||||    
T  49077371 ttaaaccaataagagtttgagtactcaagaaggtgtttaaaagagagtgttactagcattactc 49077434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 50164517 - 50164580
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||| | |||| |||| |||| |||||||||||| ||||||  |||||||||||    
T  50164517 ttaaaccaataagaaagtgagcattagagagagtgttcaaaagatagtgttactagcattactc 50164580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 27654532 - 27654474
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||||||||||||||| ||| |||| ||||| ||||||||||||   |||||||||||    
T  27654532 ccaataagagaatgagtgttagagagagtgttgaaaagagagtgtccctagcattactc 27654474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 37050686 - 37050641
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagaga 97  Q
    |||||||||||| | |||||||||||||||| || |||||||||||    
T  37050686 ttaaaccaataaaaaaatgagtattaaagagagtattcaaaagaga 37050641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 5994993 - 5995033
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagaga 97  Q
    ||||||||||||||||| |||||||| ||||| ||||||||    
T  5994993 ccaataagagaatgagtgttaaagagagtgttgaaaagaga 5995033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 11127858 - 11127905
Alignment:
Q  69 tgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||| ||||||||||||||| ||||||||| ||| |||||||||    
T  11127858 tgagtattagagagggtgttcaaaa-agagtgttgataggattactctt 11127905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 24938473 - 24938409
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||||| | ||||||| |||  ||||| |||||| | ||||| ||||||||||||    
T  24938473 ttaaaccaataagagagtaagtattagagaaagtgttgaaaagataatgttgctagcattactct 24938409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 27654518 - 27654478
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacatt 47  Q
    |||||| ||||||||||||||||||||||||| ||| ||||    
T  27654518 agtgttagagagagtgttgaaaagagagtgtccctagcatt 27654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 34961771 - 34961828
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||||| ||||| ||| |||||||||||||  ||||||||| ||||||||| ||||||||    
T  34961771 ttaaactaataaaagagtgagtattaaaga--gtgttcaaacgagagtgttattagcatt 34961828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 37451071 - 37451023
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtg 100  Q
    |||||||||||| ||| ||||||||| ||| |||||| |||||||||||    
T  37451071 ttaaaccaataaaagagtgagtattagagaaggtgtttaaaagagagtg 37451023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 40662070 - 40662106
Alignment:
Q  15 agagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  40662070 agagagtgttgaaaaaagagtgtctctagcattcctc 40662106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 46517413 - 46517475
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattact 114  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  46517413 ttaaaccaataagagaatgagtattagagaggctgttcaaaagagagtgttgctagcattact 46517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 22190061 - 22190124
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||||||||||  || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  22190061 ttaaaccaataaacgagtgagtattagagagggtgttcaaaagagagtgttgttagcattactc 22190124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 32212928 - 32212864
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||| |||||||    
T  32212928 ttaaaccaataagagagtgagtattatatagggtgttcaaaagagagtgttgctagcgttactct 32212864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 6580060 - 6580002
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcat 110  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||    
T  6580060 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttggtagcat 6580002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 39254205 - 39254270
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||| |||||||||| ||||| |||||||| |||||||||||||| ||||||||||||| |||||    
T  39254205 ttaaatcaataagagagtgagtgttaaagagagtgttcaaaagagaatgttgttagcattgctctt 39254270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 48374497 - 48374432
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||| |||||| ||||||||| |||| |||||||||||||||||||| ||||| |||||||    
T  48374497 ttaaaccaacaagagagtgagtattagagagagtgttcaaaagagagtgttgctagcactactctt 48374432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 27949395 - 27949463
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttcta 120  Q
    |||||| ||||||||| ||||||||| |||| |||||||||||||||||||| ||||||| ||| ||||    
T  27949395 ttaaactaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatttctcgtcta 27949463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 44350860 - 44350800
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    ||||||||| || ||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  44350860 ttaaaccaacaaaagagtgagtattagagatggtgttcaaaagagagtgttgttagcatta 44350800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 6442287 - 6442352
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||| ||| |||||||||||||  |||||||||||| ||||||| || ||||||||||    
T  6442287 ttaaaccaataaaagagtgagtattaaagatagtgttcaaaagaaagtgttgctaacattactctt 6442352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 11824193 - 11824254
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||| |||||||| | ||||||||| ||||  |||||||||||||||||||||||||||||||    
T  11824193 ttaaatcaataagaaagtgagtattagagag--tgttcaaaagagagtgttgttagcattactc 11824254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 27888404 - 27888468
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||||| ||||| ||| |||| ||| |||||||||||||||| ||||||| ||||    
T  27888404 ttaaaccaataagagagtgagtgttagagagagtgctcaaaagagagtgttgctagcattcctct 27888468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 7775121 - 7775183
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattact 114  Q
    |||||| |||||| || ||| ||||| |||| |||||||||||||| ||||||||||||||||    
T  7775121 ttaaacaaataagtgagtgaatattagagagagtgttcaaaagagaatgttgttagcattact 7775183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 25686893 - 25686831
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattact 114  Q
    |||||||||||||| ||||||||||| | ||  ||||||||||||||||||| || |||||||    
T  25686893 ttaaaccaataagataatgagtattagaaagaatgttcaaaagagagtgttgctaacattact 25686831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 2520674 - 2520626
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctcttaa 55  Q
    |||||||||||||||||||||||||||||||  ||| || |||||||||    
T  2520674 agtgttggagagagtgttgaaaagagagtgttcctagcactcctcttaa 2520626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 2911802 - 2911754
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctcttaa 55  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| ||||||    
T  2911802 agtgttgaagatagtgttgaaaagagagtgtctctgacattcttcttaa 2911754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 11692301 - 11692361
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    |||||| |||| |||| ||||||||| |||| |||||||||||||||||||| ||| ||||    
T  11692301 ttaaactaatatgagagtgagtattagagagtgtgttcaaaagagagtgttgctagtatta 11692361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 31628121 - 31628180
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||||||||||||||| | |||||||||||  |||||||||||  ||||| |||||||||    
T  31628121 ttaaaccaataagagagtaagtattaaagatagtgttcaaaagcaagtgtcgttagcatt 31628180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 32205198 - 32205249
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttg 103  Q
    |||||| ||||||||| ||||||||| ||||| ||||||||||| |||||||    
T  32205198 ttaaactaataagagagtgagtattagagaggatgttcaaaagaaagtgttg 32205249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 37490044 - 37490087
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcct 50  Q
    |||||| |||||||||||||||||||||||||  ||||||||||    
T  37490044 agtgtttgagagagtgttgaaaagagagtgtccttaacattcct 37490087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 7459465 - 7459527
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattact 114  Q
    |||||||||||| ||| |||||||||||||| || ||||||  | ||||||| ||||||||||    
T  7459465 ttaaaccaataaaagagtgagtattaaagagagtattcaaataaaagtgttgctagcattact 7459527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 14795253 - 14795315
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||| ||||||||| ||||||| | |||| |||||||||  ||||||||| ||||||||||||    
T  14795253 ttaaactaataagagagtgagtataagagagagtgttcaaa--agagtgttgctagcattactct 14795315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 15242245 - 15242307
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||| ||||||||| ||||||| | |||| |||||||||  ||||||||| ||||||||||||    
T  15242245 ttaaactaataagagagtgagtataagagagagtgttcaaa--agagtgttgctagcattactct 15242307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 17749817 - 17749882
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||| ||||| ||||| ||||| ||| |||| |||| ||||||||||||||| ||||| |||||||    
T  17749817 ttaacccaatgagagagtgagtgttagagagagtgtccaaaagagagtgttgctagcactactctt 17749882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 24539180 - 24539115
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||| ||||| ||||| ||||| ||| |||| |||| ||||||||||||||| ||||| |||||||    
T  24539180 ttaacccaatgagagagtgagtgttagagagagtgtccaaaagagagtgttgctagcactactctt 24539115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 1392749 - 1392814
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||    
T  1392749 ttaaaccaataagagagtgagtattagatagggtgttcaaaagagagtgttgctagcattactctt 1392814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 34905458 - 34905523
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  34905458 ttaaaccaataagagagtgagtattagagagggtgttcaaaagagagtgttgctagcatcactctt 34905523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 16852031 - 16851964
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttct 119  Q
    |||||||||||||||| || ||||||  |||| ||||||||||||||||||| |||| ||||||||||    
T  16852031 ttaaaccaataagagagtgggtattagggaggatgttcaaaagagagtgttgctagccttactcttct 16851964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 5106420 - 5106480
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    |||||||||||| ||| ||| ||||| |||| ||||||||||||| |||||||||||||||    
T  5106420 ttaaaccaataatagagtgaatattagagagtgtgttcaaaagagggtgttgttagcatta 5106480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 12780817 - 12780773
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagag 96  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  12780817 ttaaaccaataagggaatgaatattagagagggtgttcaaaagag 12780773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 21987414 - 21987478
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||| | ||||||||| |||| ||||||||||||| ||| || ||||| ||||||    
T  21987414 ttaaaccaataagaaagtgagtattagagagagtgttcaaaagagggtggtgctagcactactct 21987478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 10133216 - 10133165
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttg 103  Q
    |||||||||||| ||| |||||||||||| | || |||||||||||||||||    
T  10133216 ttaaaccaataaaagagtgagtattaaagtgagtattcaaaagagagtgttg 10133165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 16187490 - 16187427
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||||||| || ||||||||| ||||  |||| |||||||||||||| || ||||||||||    
T  16187490 ttaaaccaataagcgagtgagtattagagag--tgttgaaaagagagtgttgctaacattactctt 16187427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 29610376 - 29610422
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctctt 53  Q
    |||||| |||||||||||||||||||||||||  || ||||||||||    
T  29610376 agtgtttgagagagtgttgaaaagagagtgtcattagcattcctctt 29610422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 16436186 - 16436251
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||||||  || ||| ||||||| || ||||| |||||||||||||| || ||||||||||    
T  16436186 ttaaaccaataatcgactgaatattaaaaagagtgtttaaaagagagtgttgctaacattactctt 16436251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 25326872 - 25326827
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctct 52  Q
    ||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  25326872 agtgttgaagagagtgttgaaaagagagtgtccctatcattactct 25326827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 26159407 - 26159362
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctct 52  Q
    ||||||| |||||||||||||||||||||||| ||| |||| ||||    
T  26159407 agtgttgaagagagtgttgaaaagagagtgtccctatcattactct 26159362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 445940 - 445976
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgtt 88  Q
    |||||||||||||||||||||||||| |||| |||||    
T  445940 ttaaaccaataagagaatgagtattagagagagtgtt 445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 16983516 - 16983580
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  16983516 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcattactct 16983580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 34861250 - 34861190
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  34861250 ttaaaccaataagagagtgagtattagggagggtgttcaaaagagagtgttgctagcatta 34861190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 5980004 - 5980057
Alignment:
Q  55 aaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagc 108  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||    
T  5980004 aaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagc 5980057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 1977231 - 1977167
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||| ||| ||||||||| |||| ||||||||||||| |||||  ||||||||||||    
T  1977231 ttaaaccaataaaagagtgagtattagagagtgtgttcaaaagagtgtgttactagcattactct 1977167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 13407381 - 13407322
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||| ||||| ||||||||||| ||| |||| |||||||||||||||||||| |||||||    
T  13407381 ttaacccaatgagagaatgagtgttagagagagtgttcaaaagagagtgttgctagcatt 13407322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 24055983 - 24055929
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgtta 106  Q
    |||||||||||||||| ||||| ||| |||  |||||||||||||||||||||||    
T  24055983 ttaaaccaataagagagtgagtgttagagaaagtgttcaaaagagagtgttgtta 24055929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 9952815 - 9952752
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||| |||||||||| ||||| |||||| ||||||||||||| || | |||||||    
T  9952815 ttaaaccaataagataatgagtatttaagagagtgttc-aaagagagtgttgctaacgttactct 9952752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 24683713 - 24683757
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||    
T  24683713 agtgttggagatagtgttgaaaagagagtgtccctagcattcctc 24683757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 1961402 - 1961445
Alignment:
Q  74 attaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||| |||| |||||||||||||||||||| |||||||||||||    
T  1961402 attagagagagtgttcaaaagagagtgttgctagcattactctt 1961445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 5095818 - 5095759
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||||||||||||||| ||||||||| ||||| |||| ||||| |||||||  |||||||    
T  5095818 ttaaaccaataagagagtgagtattagagaggatgtttaaaagtgagtgttcctagcatt 5095759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 6098835 - 6098776
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    ||||| |||||||||| ||||||||| ||||  |||| ||||||||||||||||| ||||    
T  6098835 ttaaatcaataagagagtgagtattagagagaatgtttaaaagagagtgttgttatcatt 6098776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 8903974 - 8904037
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| | |||| || | | | ||||||||||||||||||||||| |||||||    
T  8903974 ttaaaccaataagagagtaagtaatagaaaagatgttcaaaagagagtgttgttagtattactc 8904037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 9193506 - 9193569
Alignment:
Q  54 aaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||| | |||| ||||||| ||  |||| ||||||||||||||| |||||||||||||    
T  9193506 aaaccaataaaaaaatgtgtattaatgatcgtgtacaaaagagagtgttgctagcattactctt 9193569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 11574160 - 11574214
Alignment:
Q  61 taagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||||| ||||| |||||||| |||||||||||||||||||  || ||||||||    
T  11574160 taagagagtgagtgttaaagagagtgttcaaaagagagtgttcctaacattactc 11574214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 38091492 - 38091538
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctctt 53  Q
    ||||||||||||||||||||||||||| |||  ||| ||||||||||    
T  38091492 agtgttggagagagtgttgaaaagagaatgttgctagcattcctctt 38091538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 17499291 - 17499229
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||||| ||||||||| |||| ||  |||||  ||||||||| ||||||||||||    
T  17499291 ttaaaccaataagagagtgagtattagagagagttgtcaaa--agagtgttgctagcattactct 17499229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 35151785 - 35151728
Alignment:
Q  54 aaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    |||| ||||||| | ||| ||||||| || |||||||||||||||||||| |||||||    
T  35151785 aaactaataagaaagtgaatattaaatagagtgttcaaaagagagtgttgctagcatt 35151728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 24683614 - 24683566
Alignment:
Q  69 tgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||| ||||| ||||||||||||  |||||||| |||||    
T  24683614 tgagtattaaagagagtgttgaaaagagagtgtccttagcatttctctt 24683566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 28413927 - 28413864
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||| |||||||||||| | | | ||||||||||||||||  || ||||||||||||    
T  28413927 ttaaaccaataaaagaatgagtatt-aggcgagtgttcaaaagagagtactgctagcattactct 28413864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 30085517 - 30085565
Alignment:
Q  6 aagtgttggagagagtgttgaaaagagagtgtctctaacattcctctta 54  Q
    ||||||| |||||||||||  ||||||||||||  ||||||||||||||    
T  30085517 aagtgttagagagagtgttagaaagagagtgtccataacattcctctta 30085565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 36804897 - 36804833
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    ||||| |||||||||| | ||||||| ||||  |||| |||||||||||||||| ||||| ||||    
T  36804897 ttaaatcaataagagagtaagtattagagagaatgttgaaaagagagtgttgttggcatttctct 36804833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 39023506 - 39023563
Alignment:
Q  56 accaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||||||||  |||| ||||| |||| | ||||||| |||||||||||    
T  39023506 accaataagagaatgagtatt--agagagtgttaaaaaaatagtgttgctagcattactc 39023563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 45525015 - 45525059
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||    
T  45525015 agtgttgaagagagtgttgaaaagagagtgtccctggcattcctc 45525059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 39974258 - 39974193
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| | ||  |||||||||||||||||||||||||||||||||    
T  39974258 ttaaaccaataagagagtgagtattagaaagaatgttcaaaagagagtgttgttagcattactctt 39974193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 8899136 - 8899199
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||| ||||| |||||||||||    
T  8899136 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagattgttgctagcattactc 8899199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 6133683 - 6133623
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||||| || |||||    
T  6133683 ttaaaccaataagagagtgagtattagagaggatgttcaaaagagagtgttgctaacatta 6133623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 25543461 - 25543511
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgtt 102  Q
    |||||||||||||| | ||||||||| |||| |||||||||||||||||||    
T  25543461 ttaaaccaataagatagtgagtattagagagagtgttcaaaagagagtgtt 25543511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 26980320 - 26980262
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcat 110  Q
    ||||| |||||||||| ||||||||| |||| ||||| |||||||||||||| ||||||    
T  26980320 ttaaatcaataagagagtgagtattatagagagtgttgaaaagagagtgttgctagcat 26980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 7548791 - 7548746
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgtt 102  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||    
T  7548791 ccaataagagaatgagtgttgaagagggtgttgaaaagagagtgtt 7548746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 12767386 - 12767318
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttcta 120  Q
    |||||||||||| ||| ||||||||| ||||||| ||||||||||| | ||| ||||| | ||||||||    
T  12767386 ttaaaccaataaaagagtgagtattagagagggttttcaaaagagatttttgctagcacttctcttcta 12767318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 15928677 - 15928738
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||| ||| ||||||||| ||||  ||||||||||||||||||| ||||| |||||    
T  15928677 ttaaaccaataaaagagtgagtattagagag--tgttcaaaagagagtgttggtagcactactc 15928738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 18473690 - 18473650
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacatt 47  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  18473690 agtgttgaagagagtgttgaaaagagagtgtctctagcatt 18473650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 19101659 - 19101595
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||||| | ||||||||| |||| ||||||||||||||||  || ||||| ||||||    
T  19101659 ttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtagtgctagcactactct 19101595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 30678969 - 30678902
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttct 119  Q
    |||| ||||||||||| ||||| ||| |||| ||| |||||| ||||||||| ||||||| |||||||    
T  30678969 ttaagccaataagagagtgagtgttagagagagtgctcaaaaaagagtgttgctagcattcctcttct 30678902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 26980387 - 26980441
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    ||||||| ||| ||||||||| |||| ||||| ||||| ||||||||||||||||    
T  26980387 ccaataatagagtgagtattagagagagtgttgaaaagtgagtgttgttagcatt 26980441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 32848708 - 32848762
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatt 111  Q
    ||||||| ||| |||||  || |||| ||||||||||||||||||||||||||||    
T  32848708 ccaataaaagagtgagtgctagagagagtgttcaaaagagagtgttgttagcatt 32848762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 1093107 - 1093062
Alignment:
Q  72 gtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||    
T  1093107 gtattaaagagagtgttcaagagagagtgttgttatcactactctt 1093062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 16948587 - 16948522
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||| |||||||||| ||||||||| |||   ||||||| ||||||||||| ||||||| |||||    
T  16948587 ttaaatcaataagagagtgagtattagagaaaatgttcaacagagagtgttgctagcattcctctt 16948522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 22540505 - 22540550
Alignment:
Q  71 agtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||| ||||||||||||||||| || ||||| ||||||    
T  22540505 agtattaaagagagtgttcaaaagagagtggtgctagcactactct 22540550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 28218072 - 28218039
Alignment:
Q  84 gtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||||||| |||||||||||||    
T  28218072 gtgttcaaaagagagtgttgctagcattactctt 28218039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 39019616 - 39019571
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctct 52  Q
    |||||| ||||||||||||||||||||||||  ||| |||||||||    
T  39019616 agtgtttgagagagtgttgaaaagagagtgttgctagcattcctct 39019571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 41948204 - 41948139
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||| |||||||||| ||||| ||| |||| |||||||||||||| | ||| ||||||| |||||    
T  41948204 ttaaatcaataagagagtgagtgttagagagagtgttcaaaagagaatattgctagcattgctctt 41948139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 8741281 - 8741217
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||| ||||||||| ||||||||| |||   ||||||||||||||||||| ||| || |||||    
T  8741281 ttaaactaataagagagtgagtattagagaaattgttcaaaagagagtgttgctagtataactct 8741217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 11458450 - 11458478
Alignment:
Q  23 ttgaaaagagagtgtctctaacattcctc 51  Q
    |||||||||||||||||||||||||||||    
T  11458450 ttgaaaagagagtgtctctaacattcctc 11458478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 21466678 - 21466614
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    ||||| |||||||| | ||| ||||| |||| ||||||||||||||||| || ||||| ||||||    
T  21466678 ttaaatcaataagaaagtgaatattagagagagtgttcaaaagagagtggtgctagcactactct 21466614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 33193172 - 33193212
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaa 92  Q
    |||||||||||||||||||||||||| |||  |||||||||    
T  33193172 ttaaaccaataagagaatgagtattagagaaagtgttcaaa 33193212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 33234022 - 33233986
Alignment:
Q  15 agagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    ||||||||||||||||||||||||| || ||||||||    
T  33234022 agagagtgttgaaaagagagtgtctatagcattcctc 33233986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 36567019 - 36567075
Alignment:
Q  59 aataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||| ||| ||||||||| |||| |||||||||||||||| || | ||||||||||    
T  36567019 aataatagagtgagtattagagagtgtgttcaaaagagagtcttctgagcattactc 36567075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 37553007 - 37552962
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagt 99  Q
    ||||| |||||||||| |||||||||||||  ||||||||||||||||    
T  37553007 ttaaatcaataagagagtgagtattaaaga--gtgttcaaaagagagt 37552962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 39019700 - 39019752
Alignment:
Q  63 agagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    ||||| ||||||||| |||  |||||||||||||||||||| ||||| |||||    
T  39019700 agagagtgagtattagagaaagtgttcaaaagagagtgttgctagcactactc 39019752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 8469 - 8405
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||||||||| ||||| |||||||||||| || |||||||||||||||||||||| |||||||    
T  8469 ttaaaccaataaaagaattagtattaaagagagtattcaaaagagagtgttgttagccttactct 8405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 27934 - 27997
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||| |||||    
T  27934 ttaaaccaataagagagtgagtattaaagagagtgttcaaaagagggtgttgctagcactactc 27997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 1923610 - 1923545
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||| ||||||||||| ||| | ||||||||| |||||||||||| ||||||||||    
T  1923610 ttaaaccaataagataatgagtattagagatgatgttcaaaaaagagtgttgttaccattactctt 1923545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 37455470 - 37455539
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagg----gtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| |||||    |||||||||||||||||||| |||||||||||||    
T  37455470 ttaaaccaataagagagtgagtattagagagggagggtgttcaaaagagagtgttgctagcattactctt 37455539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 28490780 - 28490729
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttg 103  Q
    |||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  28490780 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttg 28490729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 1649591 - 1649545
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctctt 53  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  1649591 agtgttagagagagtgttgaaaagagagtgtccctaacattcctctt 1649545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 25002044 - 25001999
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctct 52  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  25002044 agtgttggagagagtgttgaaaagagagtgtccctatcattcctct 25001999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 41105628 - 41105563
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||||||||||||  |||||||| |||| ||| |||||||||||||||| | |||||||||||    
T  41105628 ttaaaccaataagagagcgagtattagagagagtgctcaaaagagagtgttgctcgcattactctt 41105563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 28223834 - 28223779
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttag 107  Q
    |||||||||||| ||| ||||||||| ||||| |||||||||||| ||||||||||    
T  28223834 ttaaaccaataaaagagtgagtattagagaggatgttcaaaagagggtgttgttag 28223779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 20526796 - 20526751
Alignment:
Q  6 aagtgttggagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||    
T  20526796 aagtgttaaagaaagtgttgaaaagagagtgtctctaacattcctc 20526751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 30325932 - 30325883
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgt 101  Q
    |||||||||||||| | ||||||||| |||| ||||||||||||||||||    
T  30325932 ttaaaccaataagaaagtgagtattagagagagtgttcaaaagagagtgt 30325883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 33854106 - 33854147
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattc 48  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  33854106 agtgtttgagaaagtgttgaaaagagagtgtctctaacattc 33854147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 12076120 - 12076053
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttct 119  Q
    |||| ||||| ||||| ||||||||| | |  |||||||||||||||||||| ||||| |||||||||    
T  12076120 ttaagccaattagagagtgagtattagataaagtgttcaaaagagagtgttgctagcactactcttct 12076053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 28434876 - 28434813
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttct 119  Q
    |||||||||||||| ||||||||||| |||    ||| |||||||| ||||| |||||||||||||||    
T  28434876 ttaaaccaataagaaaatgagtattagaga----gtttaaaagagaatgttgctagcattactcttct 28434813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 32309514 - 32309477
Alignment:
Q  14 gagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  32309514 gagagaatgttgaaaagagagtgtctctagcattcctc 32309477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 36337925 - 36337880
Alignment:
Q  72 gtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||| |||| |||||||||||| ||||||| |||||||||||||    
T  36337925 gtattagagagagtgttcaaaagatagtgttgatagcattactctt 36337880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 41330451 - 41330390
Alignment:
Q  52 ttaaaccaataagagaatg-agtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||| |||| |||||||||||| |||||||||  ||||||||| |||||||||||    
T  41330451 ttaaaccaataaga-aatgtagtattaaagagtgtgttcaaa--agagtgttgctagcattactc 41330390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 4959333 - 4959273
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||| ||| || |||||| |||| ||| |||||||||||||||| ||||||| |||||    
T  4959333 ccaataaaagagtgggtattagagagagtgctcaaaagagagtgttgctagcattcctctt 4959273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 8622910 - 8622958
Alignment:
Q  69 tgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||| |||||||||||||||||||  |||||||| ||||||| |||||    
T  8622910 tgagtgttaaagagggtgttcaaaaatgagtgttgctagcatttctctt 8622958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 25710530 - 25710494
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgtt 88  Q
    |||||||||||||||||||| |||||||||| |||||    
T  25710530 ttaaaccaataagagaatgaatattaaagagagtgtt 25710494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 26072150 - 26072106
Alignment:
Q  65 agaatgagtattaaagagggtgttcaaaagagagtgttgttagca 109  Q
    ||||||||||||| | || ||| ||||||||||||||||||||||    
T  26072150 agaatgagtattagaaagagtgctcaaaagagagtgttgttagca 26072106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 34384741 - 34384701
Alignment:
Q  60 ataagagaatgagtattaaagagggtgttcaaaagagagtg 100  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  34384741 ataaaagagtgagtattaaagagagtgttcaaaagagagtg 34384701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 41034468 - 41034424
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    ||||||||| ||||||||||||||||||||| | || ||||||||    
T  41034468 agtgttggatagagtgttgaaaagagagtgtttgtagcattcctc 41034424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 12989313 - 12989370
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagca 109  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||    
T  12989313 ttaaaccaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagca 12989370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 26767819 - 26767754
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||| ||| ||||||||| | || |||||||||||| ||||||| |||||||||||||    
T  26767819 ttaaaccaataaaagagtgagtattagatagagtgttcaaaagaaagtgttgctagcattactctt 26767754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 32856193 - 32856128
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||||||||| | ||||||||||||| ||||||||| || |||| |||||    
T  32856193 ttaaaccaataagagattgagtattagaaagggtgttcaaaatagagtgttgctaacatttctctt 32856128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 6980171 - 6980111
Alignment:
Q  59 aataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttct 119  Q
    ||||||||| ||||||||| |||  ||||||||||||||||||||  ||||||||||||||    
T  6980171 aataagagagtgagtattagagaaagtgttcaaaagagagtgttgcaagcattactcttct 6980111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 45554681 - 45554741
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcatta 112  Q
    |||||||||||||| | ||||||||| ||||  |||||||||||||||||||||| |||||    
T  45554681 ttaaaccaataagaaagtgagtattagagagaatgttcaaaagagagtgttgttatcatta 45554741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 18949342 - 18949381
Alignment:
Q  15 agagagtgttgaaaagagagtgtctctaacattcctctta 54  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  18949342 agagaatgttgaaaagagagtgtctctaacattcctctta 18949381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 19639215 - 19639278
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| ||| ||||| ||||| | ||||||||| | |||||||||||||||||    
T  19639215 ttaaaccaataagagagtgaatattatagaggctattcaaaagaaaatgttgttagcattactc 19639278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 19837808 - 19837871
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactc 115  Q
    |||||||||||||||| ||| ||||| ||||| | ||||||||| | |||||||||||||||||    
T  19837808 ttaaaccaataagagagtgaatattatagaggctattcaaaagaaaatgttgttagcattactc 19837871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 42669869 - 42669915
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctctt 53  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  42669869 agtgttgaagagagtgttgaaaagagagcgtccctaacattcctctt 42669915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 9470203 - 9470267
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||||||| ||| ||||| ||||||| |||| |||||||||||| |||||| ||||||    
T  9470203 ttaaaccaataagagagtgaatattagagagggt-ttcagaagagagtgttgctagcatcactctt 9470267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 38464285 - 38464342
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagca 109  Q
    |||||||||||||||| | ||||||| |||| |||||||||||||||| ||| |||||    
T  38464285 ttaaaccaataagagagtaagtattagagagagtgttcaaaagagagtattgctagca 38464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 43400256 - 43400321
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||| | ||||||| || | ||| ||||| |||||||||||||| |||||||||||||    
T  43400256 ttaaaccaataataaaatgagtgtttaggagagtgttgaaaagagagtgttgctagcattactctt 43400321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 6315786 - 6315846
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    ||||||| ||| ||| ||||||| || ||| |||||||||||||||||||||||| |||||    
T  6315786 ccaataaaagagtgaatattaaaaagagtgctcaaaagagagtgttgttagcattcctctt 6315846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 15884551 - 15884619
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactcttcta 120  Q
    |||||||||||||| ||||||||||| |||  ||| ||||||||||| || || |||||||||| ||||    
T  15884551 ttaaaccaataagataatgagtattagagattgtggtcaaaagagagcgtcgtcagcattactcatcta 15884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 19193541 - 19193497
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctc 51  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||    
T  19193541 agtgttggagagagtgttgaaaagagagtgttgctagcattcctc 19193497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 19193650 - 19193689
Alignment:
Q  15 agagagtgttgaaaagagagtgtctctaacattcctctta 54  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  19193650 agagagtgttgaaaagagagtgtctctagcattcatctta 19193689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 35523424 - 35523378
Alignment:
Q  7 agtgttggagagagtgttgaaaagagagtgtctctaacattcctctt 53  Q
    ||||||| |||||||||||||||||||||||| ||| |||| |||||    
T  35523424 agtgttgaagagagtgttgaaaagagagtgtccctagcatttctctt 35523378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 12098924 - 12098862
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactct 116  Q
    |||||| ||||||||| |||||||||||||  |||||| ||| ||| ||||| ||||||||||||    
T  12098924 ttaaactaataagagagtgagtattaaaga--gtgttccaaatagaatgttgctagcattactct 12098862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 35523488 - 35523533
Alignment:
Q  9 tgttggagagagtgttgaaaagagagtgtctctaacattcctctta 54  Q
    ||||||||||| |||||||||||||||||| ||| ||||| |||||    
T  35523488 tgttggagagaatgttgaaaagagagtgtccctatcattcatctta 35523533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 44274356 - 44274421
Alignment:
Q  52 ttaaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattactctt 117  Q
    |||||||||||| ||| ||||| ||| ||||  | || |||||||||||||||||||||| |||||    
T  44274356 ttaaaccaataacagagtgagtgttagagagaatatttaaaagagagtgttgttagcattcctctt 44274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 19193628 - 19193672
Alignment:
Q  57 ccaataagagaatgagtattaaagagggtgttcaaaagagagtgt 101  Q
    ||||||||||||||||| || ||||| ||||| ||||||||||||    
T  19193628 ccaataagagaatgagtgttcaagagagtgttgaaaagagagtgt 19193672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 204765 - 204704
Alignment:
Q  53 taaaccaataagagaatgagtattaaagagggtgttcaaaagagagtgttgttagcattact 114  Q
    ||||||||||| ||| |||||| || ||||  ||||||||| ||||||||| ||||||||||    
T  204765 taaaccaataaaagagtgagtactagagagaatgttcaaaaaagagtgttgctagcattact 204704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University