View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19066_low_3 (Length: 562)
Name: NF19066_low_3
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19066_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 546
Target Start/End: Original strand, 8060605 - 8061160
Alignment:
| Q |
11 |
cacagaactaagtgacaaatttgataaaagagaggctctgattttgtggctttttgctaaacaacaaagggaagcaagtgcccgtgaatatatctagtgg |
110 |
Q |
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| T |
8060605 |
cacacaactaagtgacaaatttgataaaagagagactctgattttgtggctttttgctaaacaacaaagggaagcaagtgcccgtgaatatatctagtgg |
8060704 |
T |
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| Q |
111 |
gtcataaccgaaaggcaccctctttctaaccccactaccacgttgaagaatcatagcaggtcagaataaagaatttcataattaatatatggctttaggc |
210 |
Q |
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| T |
8060705 |
gtcataaccgaaaggcaccctctttctaaccccactaccacgttgaagaatcatagcaggtcagaataaagaatttcataattaatatatggctttaggt |
8060804 |
T |
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| Q |
211 |
aatactt---------------------gcatgttgaaggtaataaggtagcatagacatgacctaatagatagattttgtatgtgtttttgagattgta |
289 |
Q |
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| T |
8060805 |
aatacttttcttgagttctttttgtgttgcatgttgaaggtaataaggtagcatagacatgacctaatagataaattttgtatgtgtttttgagattgta |
8060904 |
T |
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| Q |
290 |
ctgacatgagaattatgccaactaaggaatagacgtggccccttcagaagaagggacgactctgtccacgtggtcaagacacctcatactttgactaaat |
389 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8060905 |
ctgccatgagaattatgccaactaaggaatagacgtggccccttcagaagaagggacgactctgtctacgtggtcaagacacctcatactttgactaaag |
8061004 |
T |
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| Q |
390 |
atttcttatataaaacacattaggctttgattaagtctagaagaggtggagtagtgggagacccccggatcctccactctctactcatccactgcttcta |
489 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8061005 |
atttcttatataaaacacattaagcttcgattaagtctagaagaggtggagtagtgggagaccccaggatcctccactctctactcatccactgcttcta |
8061104 |
T |
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| Q |
490 |
gtattgaactatataaataaggggatcttgatcatcaagattcattcacttcttctt |
546 |
Q |
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| T |
8061105 |
gtattgaactatataaataa-gggatcttgatcatcacgattcattcacttcttctt |
8061160 |
T |
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