View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19066_low_4 (Length: 507)
Name: NF19066_low_4
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19066_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 507
Target Start/End: Complemental strand, 48998885 - 48998392
Alignment:
| Q |
14 |
gatagaagatatggaagtgagtgagagagtcctttcaattctgagcaatttggtgtcgagtcctgagggtagaaaagctataagtgccgttaaggatgca |
113 |
Q |
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| T |
48998885 |
gatagaagatatggaagtgagtgagagagtcctttcaattctgagcaatttggtgtcgagtcctgagggtagaaaagctataagtgctgttaaggatgca |
48998786 |
T |
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| Q |
114 |
atcacagttttggtcgatgtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctg |
213 |
Q |
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| T |
48998785 |
atcacagttttggtcgatgtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctg |
48998686 |
T |
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| Q |
214 |
atagacaagtcatgattgaggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgca |
313 |
Q |
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| T |
48998685 |
atagacaagccatgattgaggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgca |
48998586 |
T |
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| Q |
314 |
atgtttcaggctagataaagggaagcaggtttctatgagctgtgatggtggaaacttaggtttaactgtctctgcgcctatttgtgcttcttcgtcttct |
413 |
Q |
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| T |
48998585 |
atgtttcaggctagataaagggaagcaggtttctaggagctgtgatggtggaaacttaggtttaactgtctctgcgcctatttgtgcttcttcgtcttct |
48998486 |
T |
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| Q |
414 |
tttgtgaagacagatggaggaggtaaagagtgtttaatggaggaggtgaatatgatgagtgatgaaaagaaagcggtgaagcaattagttcagc |
507 |
Q |
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| T |
48998485 |
cttgtgaagacagatggaggaggtaaagagtgtttaatggaggaggtgaatatgatgagtgatgaaaagaaagcagtgaagcaattagttcagc |
48998392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 42563939 - 42564055
Alignment:
| Q |
145 |
cagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagtcatgattgaggcagggattgt |
244 |
Q |
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| T |
42563939 |
cagattcacctaaatgtcaagagaatatttcatatattttgatgattatggcacgcaaagcttatgatgataggcaagccataattgaggcagagattat |
42564038 |
T |
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| Q |
245 |
atcgtcattgcttgagt |
261 |
Q |
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| T |
42564039 |
atcgttgttgcttgagt |
42564055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 123 - 346
Target Start/End: Original strand, 2984885 - 2985108
Alignment:
| Q |
123 |
ttggtcgatgtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaag |
222 |
Q |
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| T |
2984885 |
ttggtcgatgtattgaattggaatgattcacctgaatgccaggaaaaggtttcgtatattttgatggttatgtcgcataaatcttatggtgacaagcagg |
2984984 |
T |
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| Q |
223 |
tcatgattgaggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcag |
322 |
Q |
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| T |
2984985 |
ccatgatagaggcagggattgtgtcgtcgcttcttgagttgtcgcttattggtactactttgactcagaaacgggcatcaaggctattggaaagtttgag |
2985084 |
T |
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| Q |
323 |
gctagataaagggaagcaggtttc |
346 |
Q |
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| T |
2985085 |
aatagataaagggaaacaggtttc |
2985108 |
T |
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