View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19066_low_5 (Length: 498)
Name: NF19066_low_5
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19066_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 1606959 - 1606479
Alignment:
| Q |
20 |
agtaaatttcatgcaacataaaa-gatgtgagagagaaaaaattgagcgaaaatctacaatcattaagtgatttttcgaaacttaattttaaagccttaa |
118 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1606959 |
agtaaattttatgcaacataaaaagatgtgagagagaaaaaattgattgaaaatctacaatcattaagtgatttttcgaaacttaattttaaagccctaa |
1606860 |
T |
|
| Q |
119 |
aatccaatactaaatcagtgtttaaaattagttgtcacggaaatgtgctctttatatcagaggtatatatgatattcatagtggtctaatggctttcttg |
218 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
1606859 |
aattcaatactaaatcagtgtttaaaactagttgtcacggaaatgtgctctttatatcataggtatatatgatattcatactggtctaatggctttcttg |
1606760 |
T |
|
| Q |
219 |
caa------tagcagggacactt--tagagtttagattgttatttatagtttctaa-tgtttacatatttctcttgaatcttttaaattcaggcattgat |
309 |
Q |
| |
|
||| ||||| | |||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||||| ||| |||||| |
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| T |
1606759 |
caacttatgtagcacgaacactttatagagtttagattgttatttatagtttctaattttttacatatttctcttggatcatttaaatttaggtattgat |
1606660 |
T |
|
| Q |
310 |
ggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtct |
409 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||||| || ||||| || || |||||||| |||||||| |||||||||| |||||||| || | |
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| T |
1606659 |
ggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctaagatcagcctccgatctctcagttt |
1606560 |
T |
|
| Q |
410 |
tctaccggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatct |
490 |
Q |
| |
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|||| |||||||| ||||| || || |||||||| || ||||| ||||| |||||||||||||| | ||||||||||||| |
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|
| T |
1606559 |
tctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgacaatgcttcatct |
1606479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 105 - 490
Target Start/End: Complemental strand, 1623992 - 1623601
Alignment:
| Q |
105 |
ttttaaagccttaaaatccaatactaaatcagtgtttaaaattagttgtcacggaaatgtgctctttatatcagaggtatatatgatattcatagtggtc |
204 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||| | || |
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|
| T |
1623992 |
ttttaaagccctaaaattcaatagtaaatcagtgttgaaaattagatgtcatggaaatgtgctctttatatcatagctatatatgatattcataattctc |
1623893 |
T |
|
| Q |
205 |
taatggctttcttgcaa------tagcagggacactttagagtttagattgttatttatagtttctaatgtttacatatttctcttgaatcttttaaatt |
298 |
Q |
| |
|
||||||||||||||||| || || | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1623892 |
taatggctttcttgcaacttgtctaacacgaacactttagagtttagaatgttatttatagtttctaatttttacatatttctcttgaatcttttaaatt |
1623793 |
T |
|
| Q |
299 |
caggcattgatggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcaga |
398 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
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|
| T |
1623792 |
caggcattgatggacttcatttcattgcacgtgacattacctttcaaaatactgctggtcctcacaaaggccaagctgtggcgctccgatcagcctccga |
1623693 |
T |
|
| Q |
399 |
tctctctgtcttctaccggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatct |
490 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||| | ||||||||||||| |
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|
| T |
1623692 |
tctctctgtcttctatcggtgtgctatatcgggctatcaagacactctgatggctcatgcacaacgtcaattctaccgacaatgcttcatct |
1623601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 280 - 490
Target Start/End: Original strand, 10820711 - 10820921
Alignment:
| Q |
280 |
ctcttgaatcttttaaattcaggcattgatggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtgg |
379 |
Q |
| |
|
|||||| ||| |||||||| ||| |||||||||||||| |||||||| || |||||||||||||||||||| || ||||| || || |||||||| |||| |
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|
| T |
10820711 |
ctcttggatcatttaaatttaggtattgatggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtgg |
10820810 |
T |
|
| Q |
380 |
cgctccgatcagcctcagatctctctgtcttctaccggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggca |
479 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| | |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||| || |
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|
| T |
10820811 |
cgctccgatcagcctctgatctctccgtcttctaccggtgtacaatatcgggttaccaagacaccctcatggctcatgcacaacgtcaattttacagaca |
10820910 |
T |
|
| Q |
480 |
atgcttcatct |
490 |
Q |
| |
|
||||||||||| |
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|
| T |
10820911 |
atgcttcatct |
10820921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 280 - 490
Target Start/End: Complemental strand, 1629987 - 1629777
Alignment:
| Q |
280 |
ctcttgaatcttttaaattcaggcattgatggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtgg |
379 |
Q |
| |
|
|||||| ||| |||||||| ||| |||||||||||||| |||||||| || |||||||||||||||||||| || ||||| || || ||||||||||||| |
|
|
| T |
1629987 |
ctcttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtgg |
1629888 |
T |
|
| Q |
380 |
cgctccgatcagcctcagatctctctgtcttctaccggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggca |
479 |
Q |
| |
|
|||| ||||||| || |||||||| || ||||| |||||||| ||||| || || |||||||| || ||||| ||||| |||||||||||||| | || |
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| T |
1629887 |
cgctaagatcagcgtccgatctctcagttttctatcggtgtgccatatcaggttatcaagacactctgatggctcatgcacaacgtcaattttatcgaca |
1629788 |
T |
|
| Q |
480 |
atgcttcatct |
490 |
Q |
| |
|
||||||||||| |
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|
| T |
1629787 |
atgcttcatct |
1629777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 222 - 490
Target Start/End: Complemental strand, 18781563 - 18781295
Alignment:
| Q |
222 |
tagcagggacactttagagtttagattgttatttatagtttctaatgtttacatatttctcttgaatcttttaaattcaggcattgatggacttcatttc |
321 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18781563 |
tagcacggacactttagagtttagattgttatttatagtttctaatttttacatatttctcttgaatcttttaaattcaggcattgatggacttcatttc |
18781464 |
T |
|
| Q |
322 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
18781463 |
attgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtggcgctccgatcagcctccgatctctctgtcttctatcggtgtg |
18781364 |
T |
|
| Q |
422 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacaggcaatgcttcatct |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18781363 |
ctatatcgggctaccaagacacccttatggcccatgcgcaacgtcaattttacagacaatgcttcatct |
18781295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 18784922 - 18784795
Alignment:
| Q |
8 |
tctttgtgtacaagtaaatttcatgcaacataaaagatgtgagagagaaaaaattgagcgaaaatctacaatcattaagtgatttttcgaaacttaattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
18784922 |
tctttgtgtacaagtaaatttcatgcaacataaaagatgtgagagagaaaaaattgagtgaaaatctacaatcattaagtgatttttcgaagcttaattt |
18784823 |
T |
|
| Q |
108 |
taaagccttaaaatccaatactaaatca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
18784822 |
taaagccttaaaatccaatactaaatca |
18784795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 18784797 - 18784769
Alignment:
| Q |
194 |
tcatagtggtctaatggctttcttgcaat |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18784797 |
tcatagtggtctaatggctttcttgcaat |
18784769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 476
Target Start/End: Complemental strand, 12802984 - 12802875
Alignment:
| Q |
367 |
ggtcaagctgtggcgctccgatcagcctcagatctctctgtcttctaccggtgtgctatatcgggctaccaagacacccttatggcccatgcgcaacgtc |
466 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || || |||||||||||||| ||| | | ||||||||||||||||| |||| || || ||||||| |
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|
| T |
12802984 |
ggtcaagcagtggcgcttcgatcagcctctgacctatctgtcttctaccgttgttcctttaaaggctaccaagacaccctcatggttcacgcacaacgtc |
12802885 |
T |
|
| Q |
467 |
aattttacag |
476 |
Q |
| |
|
|||||||||| |
|
|
| T |
12802884 |
aattttacag |
12802875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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