View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19066_low_6 (Length: 467)

Name: NF19066_low_6
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19066_low_6
NF19066_low_6
[»] chr6 (2 HSPs)
chr6 (190-446)||(14748505-14748757)
chr6 (12-158)||(14748151-14748297)
[»] chr7 (7 HSPs)
chr7 (119-376)||(19778639-19778896)
chr7 (178-446)||(19888420-19888685)
chr7 (135-382)||(19879622-19879866)
chr7 (239-379)||(19351773-19351913)
chr7 (238-317)||(19357084-19357163)
chr7 (203-306)||(19598578-19598681)
chr7 (226-299)||(19721198-19721271)
[»] chr3 (2 HSPs)
chr3 (119-311)||(32579703-32579886)
chr3 (203-360)||(12735612-12735769)
[»] scaffold0464 (1 HSPs)
scaffold0464 (203-360)||(7161-7318)
[»] chr2 (4 HSPs)
chr2 (203-306)||(18909640-18909743)
chr2 (203-306)||(18914388-18914491)
chr2 (203-353)||(18921492-18921639)
chr2 (263-299)||(20578968-20579004)
[»] chr5 (1 HSPs)
chr5 (264-302)||(8838500-8838538)
[»] chr8 (1 HSPs)
chr8 (262-299)||(42693665-42693702)
[»] chr1 (3 HSPs)
chr1 (274-303)||(19568064-19568093)
chr1 (262-299)||(43907684-43907721)
chr1 (262-299)||(43986912-43986949)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 190 - 446
Target Start/End: Original strand, 14748505 - 14748757
Alignment:
Q  190 gctccaacgtctctcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatgga 289  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14748505 gctccaacgtctctcctccttgatgaacttatcgtggaattcttgtcacgactccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatgga 14748604  T
Q  290 aaaccctaatttctcatgatccttcctttgcctaactgcatcttcagcgatcgcggcagaacacacaccttacactggtttcagaccagtccatgtctgg 389  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||   ||||||||||||  ||||||||||| ||||| |||||||||     
T  14748605 aaaccctaatttctcatgatccttcctttgcc-aaatgcatcttcagcgatcgcg---gaacacacacctcgcactggtttcataccagaccatgtctga 14748700  T
Q  390 ggacgagtcaaattttagtgtcgtacctttctcagtaagtaatttgctcgaggctcc 446  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  14748701 ggacgagtctgattttagtgtcgtacctttctcagtaagtaatttgctcgaggctcc 14748757  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 14748151 - 14748297
Alignment:
Q  12 agagatcaatggaaagacaacgtcttaagtcatgttacaataacaaacaaacgataaatactttgatgctcaaatgttcatgcattagtttgcaaatcct 111  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14748151 agagatcaatggaaagacaacgtctaaagtcatgttacaataacaaacaaatgataaatactttgatgctcaaatgttcatacattagtttgcaaatcct 14748250  T
Q  112 ccgccaaagtcaccagcatacttgcctctcatgatgtatttcgatcc 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14748251 ccgccaaagtcaccagcatacttgcctctcatgatgtatttcgatcc 14748297  T

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Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 119 - 376
Target Start/End: Original strand, 19778639 - 19778896
Alignment:
Q  119 agtcaccagcatacttgcctctcatgatgtatttcgatcctccgccaaagtctgcccattcaaacggcggcgctccaacgtctctcctccttgatgaact 218  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||  | | |||||||  ||||| ||||| |||||  ||||||||||||||||    
T  19778639 agtcaccagcatacttgcctctcatgacgaattccgatcctccgccaaagcatccgcattcaagtggcggtgctccgacgtcaatcctccttgatgaact 19778738  T
Q  219 tatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctcatgatccttccttt 318  Q
     |||   || ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  19778739 catcacagacatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatttctcatgatccttccttc 19778838  T
Q  319 gcctaactgcatcttcagcgatcgcggcagaacacacaccttacactggtttcagacc 376  Q
    ||| ||||||||||||||||||||| || ||||||||||||  |||||||||||||||    
T  19778839 gccaaactgcatcttcagcgatcgcagcggaacacacacctcgcactggtttcagacc 19778896  T

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Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 178 - 446
Target Start/End: Complemental strand, 19888685 - 19888420
Alignment:
Q  178 tcaaacggcggcgctccaacgtctctcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgttt 277  Q
    |||||||| || |||||||| |||||||||||||||||||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  19888685 tcaaacggtggggctccaacatctctcctccttgatgaactcatcgtggatatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgttt 19888586  T
Q  278 gcaaatcatggaaaaccctaatttctcatgatccttcctttgcctaactgcatcttcagcgatcgcggcagaacacacaccttacactggtttcagacca 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| || |||||||||||| ||||||||||||||||     
T  19888585 gcaaatcatggaaaaccctaatttctcatgatccttccttcgccaaactccatcttcagcgttcgccgcggaacacacacctcacactggtttcagaccg 19888486  T
Q  378 gtccatgtctggggacgagtcaaattttagtgtcgtacctttctcagtaagtaatttgctcgaggctcc 446  Q
    |||    ||||  |||||||| ||||| ||||||||||| ||  | |||||| ||||| | ||||||||    
T  19888485 gtc---atctgacgacgagtccaatttcagtgtcgtaccctttccggtaagtcatttgattgaggctcc 19888420  T

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Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 135 - 382
Target Start/End: Complemental strand, 19879866 - 19879622
Alignment:
Q  135 gcctctcatgatgtatttcgatcctccgccaaagtctgcccattcaaacggcggcgctccaacgtctctcctccttgatgaacttatcgtggaaatcttg 234  Q
    ||||||||||| | ||| ||||||||||| |||||||   |||||||||||||| ||||| ||||   | |||||||||||||| |||   || ||| |     
T  19879866 gcctctcatgacgaattccgatcctccgctaaagtctcagcattcaaacggcggtgctccgacgttagttctccttgatgaactcatcacagacatcctt 19879767  T
Q  235 tcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctcatgatccttcctttgcctaactgcatcttc 334  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | ||||| |||| ||| || |||||||||    
T  19879766 tcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatttc---taatcctgccttagccaaattgcatcttc 19879670  T
Q  335 agcgatcgcggcagaacacacaccttacactggtttcagaccagtcca 382  Q
    | ||||| | |  |||||||||| |  || |||||||| ||| |||||    
T  19879669 atcgatccccgtggaacacacacttagcaatggtttcaaaccggtcca 19879622  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 379
Target Start/End: Complemental strand, 19351913 - 19351773
Alignment:
Q  239 ggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctcatgatccttcctttgcctaactgcatcttcagcg 338  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||  || || |||| ||| | ||    
T  19351913 ggcttcctgtcaaaactcttatgcaattcaaatgtgtttgtaaatcatggacaaccctgatttctcatgatccttccttcaccaaattgcacctttaccg 19351814  T
Q  339 atcgcggcagaacacacaccttacactggtttcagaccagt 379  Q
     ||||| | |||||| |||||  ||||  ||||||||||||    
T  19351813 gtcgcgacggaacacccacctagcactattttcagaccagt 19351773  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 317
Target Start/End: Original strand, 19357084 - 19357163
Alignment:
Q  238 cggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctcatgatccttcctt 317  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||    
T  19357084 cggcttcccgtcaaaactctgatgcaattcaaatgcgtttgcaaatcatggaaaacccttatttctcatgattcttcctt 19357163  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 19598681 - 19598578
Alignment:
Q  203 tcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||||| ||||||||||||||| |||||| | |||   || ||||| ||  ||||| ||||||||||||| || ||||| ||||||||||||||||| ||    
T  19598681 tcctccctgatgaacttatcgttgaaatcctatcattccttcctgtaaattctcttgtgcaattcaaatgcgtctgcaagtcatggaaaaccctaatctc 19598582  T
Q  303 tcat 306  Q
    ||||    
T  19598581 tcat 19598578  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 19721198 - 19721271
Alignment:
Q  226 gaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaat 299  Q
    |||||| | ||||| || ||| |||||||||| |||||| | |||||||| |||||||||| ||||||||||||    
T  19721198 gaaatcctatcacgccttcctttcaaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaat 19721271  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 119 - 311
Target Start/End: Complemental strand, 32579886 - 32579703
Alignment:
Q  119 agtcaccagcatacttgcctctcatgatgtatttcgatcctccgccaaagtctgcccattcaaacggcggcgctccaacgtctctcctccttgatgaact 218  Q
    ||||||||||||||||||||||||||| | ||| ||||||||| ||          |||||||||  |||||||||||||||||||||||||||||||||    
T  32579886 agtcaccagcatacttgcctctcatgacgaattccgatcctccaccg---------cattcaaacttcggcgctccaacgtctctcctccttgatgaact 32579796  T
Q  219 tatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctcatgatcc 311  Q
     |||||||||||| | ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32579795 catcgtggaaatcctatcacgccttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttctgatgatcc 32579703  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 360
Target Start/End: Complemental strand, 12735769 - 12735612
Alignment:
Q  203 tcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||| ||||||||||||||||| |||||  | ||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||    
T  12735769 tccttcttgatgaacttatcgtagaaattctttcacgacttcctgtcaaaactttgatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatctc 12735670  T
Q  303 tcatgatccttcctttgcctaactgcatcttcagcgatcgcggcagaacacacacctt 360  Q
    ||||||||||||||| ||  ||||||| |||| ||||||||  | |||||| ||||||    
T  12735669 tcatgatccttccttcgctaaactgcaccttcggcgatcgcctcggaacacccacctt 12735612  T

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Target: scaffold0464 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 360
Target Start/End: Original strand, 7161 - 7318
Alignment:
Q  203 tcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||| ||||| ||||||||||| |||||  | ||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||    
T  7161 tccttcttgacgaacttatcgtagaaattctttcacgacttcctgtcaaaactctgatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctc 7260  T
Q  303 tcatgatccttcctttgcctaactgcatcttcagcgatcgcggcagaacacacacctt 360  Q
    ||||||||||||||| ||  ||||||| |||||||||||||  | |||||| ||||||    
T  7261 tcatgatccttccttcgctaaactgcaccttcagcgatcgcctcggaacacccacctt 7318  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 18909743 - 18909640
Alignment:
Q  203 tcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||| ||||| ||||| ||||  |||||| | ||||| || |||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  18909743 tccttcttgacgaactcatcgcagaaatcctttcacgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 18909644  T
Q  303 tcat 306  Q
    ||||    
T  18909643 tcat 18909640  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 18914491 - 18914388
Alignment:
Q  203 tcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||| |||||||||||||| |  |||||| | || || || |||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  18914491 tccttcttgatgaacttattgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 18914392  T
Q  303 tcat 306  Q
    ||||    
T  18914391 tcat 18914388  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 353
Target Start/End: Complemental strand, 18921639 - 18921492
Alignment:
Q  203 tcctccttgatgaacttatcgtggaaatcttgtcacggctccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||| |||||||| || ||||  |||||| | ||||| || || || |||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  18921639 tccttcttgatgagctcatcgcagaaatcctttcacgtcttccagtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 18921540  T
Q  303 tcatgatccttcctttgcctaactgcatcttcagcgatcgcggcagaacac 353  Q
    ||   |||||||||| | | || |||| ||||| ||||||| || ||||||    
T  18921539 tc---atccttccttcgtcaaaatgcaccttcatcgatcgccgcggaacac 18921492  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 20579004 - 20578968
Alignment:
Q  263 aattcaaatgtgtttgcaaatcatggaaaaccctaat 299  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  20579004 aattgaaacgtgtttgcaaatcatggaaaaccctaat 20578968  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 8838538 - 8838500
Alignment:
Q  264 attcaaatgtgtttgcaaatcatggaaaaccctaatttc 302  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  8838538 attcaagtgtgtttgcaaatcatggaaaaccctattttc 8838500  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 42693665 - 42693702
Alignment:
Q  262 caattcaaatgtgtttgcaaatcatggaaaaccctaat 299  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  42693665 caattcaaatgtgtctgcaaatcatggaaaactctaat 42693702  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 19568093 - 19568064
Alignment:
Q  274 gtttgcaaatcatggaaaaccctaatttct 303  Q
    ||||||||||||||||||||||||||||||    
T  19568093 gtttgcaaatcatggaaaaccctaatttct 19568064  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 43907684 - 43907721
Alignment:
Q  262 caattcaaatgtgtttgcaaatcatggaaaaccctaat 299  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  43907684 caatacaagtgtgtttgcaaatcatggaaaaccctaat 43907721  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 43986949 - 43986912
Alignment:
Q  262 caattcaaatgtgtttgcaaatcatggaaaaccctaat 299  Q
    |||||||||||  |||||||||||||||||||||||||    
T  43986949 caattcaaatgcatttgcaaatcatggaaaaccctaat 43986912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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