View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19066_low_8 (Length: 424)
Name: NF19066_low_8
Description: NF19066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19066_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 43226927 - 43226565
Alignment:
| Q |
18 |
tgctcagttttagaaatatttggtattaacatacatagttaaaaaaggtgtgtttggcgacggtgaacatgaaacggccaatcatctttttcttcattgt |
117 |
Q |
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| T |
43226927 |
tgctcagttttagaaatatttggtattaatatacatagttaaaaa-ggtgtgtttggcgacggtgaacatgaaacggccaatcatctttttcttcattgt |
43226829 |
T |
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| Q |
118 |
cgagtgatttcaaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtg |
217 |
Q |
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| T |
43226828 |
cgagtgatttcgaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtg |
43226729 |
T |
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| Q |
218 |
aggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttagaagatgagaaatgatcgaattttcaatgagaa |
317 |
Q |
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| T |
43226728 |
aggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggtttagaagatgagaattgatcgcatatttaatgagaa |
43226629 |
T |
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| Q |
318 |
ggtgtgtggagttgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
381 |
Q |
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| T |
43226628 |
ggtgtgtggagttgatgaaatggtggagcaagtcaaggtgattttgtggcattggagcttgagt |
43226565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 43226505 - 43226470
Alignment:
| Q |
369 |
ttggagcttgagtggttggtttacagttgcggcatt |
404 |
Q |
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| T |
43226505 |
ttggagcttgagtggttggtttacagttgcggcatt |
43226470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 15623144 - 15623223
Alignment:
| Q |
204 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
283 |
Q |
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| T |
15623144 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15623223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 204 - 283
Target Start/End: Original strand, 15646933 - 15647012
Alignment:
| Q |
204 |
ttgttggatgagtgaggtgcggtctaaaaagcttagacgaggggcttggttaatttggcacgccgtcgtgtgggtggttt |
283 |
Q |
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| T |
15646933 |
ttgttggacaagggaggtgtggtctaaaaagcttagacgaggggcgtggttaatttggcatgcggtcatttgggtggttt |
15647012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 16256768 - 16256842
Alignment:
| Q |
285 |
gaagatgagaaatgatcgaattttcaatgagaaggtgtgtggagttgatgaaatggtggagcaagtcaaggtgat |
359 |
Q |
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| T |
16256768 |
gaagatgagaaatgatagggtttttaataacaaagtttgtggggttgatgaaatggtggatcaagtcaaggtgat |
16256842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 655107 - 655248
Alignment:
| Q |
122 |
tgatttcaaaggtgtggacggaggtgatgaggtggctgaattttagttttatcacacatcccaatttgtttattcatgctacttgttggatgagtgaggt |
221 |
Q |
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||||||| |||||||||| | |||| |||| |||| ||||||||| ||||||||| | ||| || ||| ||||||| || ||||||| || ||||| |
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| T |
655107 |
tgatttctaaggtgtggaggaaggtaatgaagtggttgaattttaattttatcacccctccaaacccgttcattcatgttatttgttgggctagggaggt |
655206 |
T |
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| Q |
222 |
gcggtctaaaaagcttagacgaggggcttggttaatttggca |
263 |
Q |
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|||| || |||||||| || ||||| |||||||||||||| |
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| T |
655207 |
ttggtcaaagaagcttaggcgcggggcgtggttaatttggca |
655248 |
T |
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