View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_high_21 (Length: 251)

Name: NF19067_high_21
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_high_21
NF19067_high_21
[»] chr7 (14 HSPs)
chr7 (29-121)||(27831374-27831466)
chr7 (56-121)||(27846605-27846670)
chr7 (122-172)||(37548315-37548365)
chr7 (18-63)||(27848711-27848756)
chr7 (122-170)||(10015277-10015325)
chr7 (121-172)||(36628989-36629040)
chr7 (68-121)||(29578171-29578224)
chr7 (122-159)||(30081983-30082020)
chr7 (67-121)||(3146879-3146933)
chr7 (121-168)||(6188830-6188877)
chr7 (121-168)||(6195346-6195393)
chr7 (56-87)||(17259845-17259876)
chr7 (65-111)||(8575939-8575985)
chr7 (122-168)||(12383100-12383146)
[»] chr6 (3 HSPs)
chr6 (122-172)||(4090316-4090366)
chr6 (120-158)||(20990759-20990797)
chr6 (128-172)||(18617307-18617351)
[»] chr4 (5 HSPs)
chr4 (122-168)||(56366419-56366465)
chr4 (121-168)||(14032325-14032372)
chr4 (121-168)||(14191737-14191784)
chr4 (121-168)||(28142871-28142918)
chr4 (122-172)||(49243584-49243634)
[»] chr3 (4 HSPs)
chr3 (120-172)||(9467000-9467052)
chr3 (122-170)||(33444066-33444114)
chr3 (121-168)||(36641834-36641881)
chr3 (122-168)||(6024178-6024224)
[»] scaffold0065 (1 HSPs)
scaffold0065 (122-169)||(66832-66879)
[»] chr5 (3 HSPs)
chr5 (122-171)||(32699270-32699319)
chr5 (122-170)||(43323249-43323297)
chr5 (124-168)||(38491672-38491716)
[»] chr8 (4 HSPs)
chr8 (122-168)||(40971736-40971782)
chr8 (121-168)||(28517092-28517139)
chr8 (122-168)||(6926981-6927027)
chr8 (128-168)||(12700747-12700786)
[»] chr2 (5 HSPs)
chr2 (121-168)||(2566229-2566276)
chr2 (50-121)||(11999006-11999077)
chr2 (121-168)||(45276925-45276972)
chr2 (67-121)||(16662491-16662545)
chr2 (122-159)||(29303806-29303843)
[»] scaffold0311 (1 HSPs)
scaffold0311 (122-168)||(4570-4616)
[»] chr1 (3 HSPs)
chr1 (122-168)||(26222318-26222364)
chr1 (121-171)||(33048686-33048736)
chr1 (120-168)||(21906689-21906737)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 27831466 - 27831374
Alignment:
Q  29 agcctccaacctaaagacagtggagtaacatcgatcaacaccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  27831466 agcctccaacctaaagacagtggagtaacatcgatcaacaccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagct 27831374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 27846670 - 27846605
Alignment:
Q  56 acatcgatcaacaccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 121  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27846670 acatcgatcaacactaagtttggaacattcttaatgtcatcactcaacaaagcagcctgcacagct 27846605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 37548315 - 37548365
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37548315 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 37548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27848756 - 27848711
Alignment:
Q  18 gattatgctctagcctccaacctaaagacagtggagtaacatcgat 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27848756 gattatgctctagcctccaacctaaagacagtggagtaacatcgat 27848711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 10015277 - 10015325
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagg 170  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10015277 cagggccgttcctaacattttaggggccttaggcatagaatgaaaaagg 10015325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 36629040 - 36628989
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 172  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  36629040 tcagggtcgttcctagcattttaggggccttaggtatagaatgaagaagggc 36628989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 29578224 - 29578171
Alignment:
Q  68 accaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 121  Q
    ||||| |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  29578224 accaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagct 29578171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 30081983 - 30082020
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatag 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30081983 cagggccgttcctagcattttaggggccttaggcatag 30082020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 3146879 - 3146933
Alignment:
Q  67 caccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 121  Q
    |||||||||||||||||| |||| ||| |||| |||||||||||| |||||||||    
T  3146879 caccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagct 3146933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 6188830 - 6188877
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  6188830 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 6188877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 6195346 - 6195393
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  6195346 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 6195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 17259845 - 17259876
Alignment:
Q  56 acatcgatcaacaccaagtttggaacattctt 87  Q
    ||||||||||||||||||||||||||||||||    
T  17259845 acatcgatcaacaccaagtttggaacattctt 17259876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 8575939 - 8575985
Alignment:
Q  65 aacaccaagtttggaacattcttaatgtcatcacccaacaaagcagc 111  Q
    |||||||||||||||||||||||| || | |||| ||||||||||||    
T  8575939 aacaccaagtttggaacattcttactgccttcactcaacaaagcagc 8575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 12383146 - 12383100
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  12383146 cagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 12383100  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 4090316 - 4090366
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4090316 cagggccgttcctagcattttaggggtcttaggcatagaatgaaaaagggc 4090366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 20990797 - 20990759
Alignment:
Q  120 ctcagggccgttcctagcattttaggggccttaggcata 158  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  20990797 ctcagggccgttcctagcgttttacgggccttaggcata 20990759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 18617351 - 18617307
Alignment:
Q  128 cgttcctagcattttaggggccttaggcatagaatgaaaaagggc 172  Q
    |||||||||  ||||| ||||||||||||||| ||||||||||||    
T  18617351 cgttcctagagttttacgggccttaggcatagcatgaaaaagggc 18617307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 56366419 - 56366465
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  56366419 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 56366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 14032325 - 14032372
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  14032325 tcagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 14032372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 14191737 - 14191784
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  14191737 tcagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 14191784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 28142871 - 28142918
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  28142871 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 28142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 49243634 - 49243584
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 172  Q
    |||||||||||||||  ||||| ||||||||||||||| || |||||||||    
T  49243634 cagggccgttcctagagttttacgggccttaggcatagtattaaaaagggc 49243584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 9467000 - 9467052
Alignment:
Q  120 ctcagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 172  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  9467000 ctcagggccgttcctagcattttaggggccttagatatagaatgaaaaagggc 9467052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 33444114 - 33444066
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagg 170  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33444114 cagggccgttcctagcattttaggggccttagacatagaatgaaaaagg 33444066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 36641881 - 36641834
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  36641881 tcagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 36641834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 6024178 - 6024224
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||    
T  6024178 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 6024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 66879 - 66832
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaag 169  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  66879 cagggccgttcctagcattttaggggccttaggcatagaataaaaaag 66832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 32699319 - 32699270
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaaggg 171  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  32699319 caggaccgttcctagtattttaggggccttaggcatagaatgaaaaaggg 32699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 43323249 - 43323297
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagg 170  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  43323249 cagggccgttcctagcattttaggggcctgaggtatagaatgaaaaagg 43323297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 38491716 - 38491672
Alignment:
Q  124 gggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||| ||| |||||||||||||||||  |||||||    
T  38491716 gggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 38491672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 40971782 - 40971736
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||    
T  40971782 cagggccgttcctagcattttacgggccttaggcataatatgaaaaa 40971736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 28517139 - 28517092
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  28517139 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 28517092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 6926981 - 6927027
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||| ||| |||||||||||||||||  |||||||    
T  6926981 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 6927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 12700786 - 12700747
Alignment:
Q  128 cgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  12700786 cgttcctagcattttaggagccttaggcata-aatgaaaaa 12700747  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 2566276 - 2566229
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  2566276 tcagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 2566229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 11999006 - 11999077
Alignment:
Q  50 ggagtaacatcgatcaacaccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 121  Q
    |||||||||||   ||||||||| ||||||||||||||||  || |||| |||||||||||| || ||||||    
T  11999006 ggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagct 11999077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 45276925 - 45276972
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  45276925 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 45276972  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 16662545 - 16662491
Alignment:
Q  67 caccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 121  Q
    ||||||||||||||||| ||||||| | |||| ||||| |||||| |||||||||    
T  16662545 caccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagct 16662491  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 29303843 - 29303806
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatag 159  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  29303843 cagggccgttcctagcgtttaaggggccttaggcatag 29303806  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 4570 - 4616
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  4570 cagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 4616  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 26222364 - 26222318
Alignment:
Q  122 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||    
T  26222364 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 26222318  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 33048686 - 33048736
Alignment:
Q  121 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaaggg 171  Q
    ||||||||||||||||  ||||| ||| ||||||||||| |||||||||||    
T  33048686 tcagggccgttcctagagttttacgggtcttaggcatagtatgaaaaaggg 33048736  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 21906737 - 21906689
Alignment:
Q  120 ctcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 168  Q
    |||||| |||||||||| |||||| ||||||||||||||  ||||||||    
T  21906737 ctcaggtccgttcctagaattttatgggccttaggcataatatgaaaaa 21906689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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