View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_high_4 (Length: 428)

Name: NF19067_high_4
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_high_4
NF19067_high_4
[»] chr6 (13 HSPs)
chr6 (12-413)||(26616618-26617019)
chr6 (12-413)||(26722546-26722947)
chr6 (129-339)||(26660723-26660942)
chr6 (129-339)||(26766694-26766913)
chr6 (129-254)||(27668866-27668995)
chr6 (302-410)||(26861059-26861167)
chr6 (360-412)||(26811169-26811221)
chr6 (352-412)||(26974603-26974663)
chr6 (356-411)||(26848236-26848291)
chr6 (129-177)||(26810582-26810630)
chr6 (352-409)||(26958791-26958848)
chr6 (360-409)||(27667862-27667911)
chr6 (351-411)||(27310311-27310371)
[»] chr8 (2 HSPs)
chr8 (41-120)||(18823839-18823918)
chr8 (44-115)||(18823239-18823311)
[»] chr3 (1 HSPs)
chr3 (41-120)||(18343275-18343355)
[»] chr2 (1 HSPs)
chr2 (352-411)||(17994256-17994315)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 26616618 - 26617019
Alignment:
Q  12 gaagagagaaaagttgaaatnnnnnnnnntattaacataaattaaatcgtgatttacgtaattaccttcatctttacttgtttttaaaaaggaaagttgg 111  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616618 gaagagagaaaagttgaaataaaaaaaaatattaacataaattaaatcgtgatttacgtaattaccttcatctttacttgtttttaaaaaggaaagttgg 26616717  T
Q  112 ggtatttttaatgtttaaacacaaatgatgaagaaagtagcatactaacatttctactattactatattccgcttttaaactttcctattcttgtctgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616718 ggtatttttaatgtttaaacacaaatgatgaagaaagtagcatactaacatttctactattactatattccgcttttaaactttcctattcttgtctgat 26616817  T
Q  212 tttggagctcacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 311  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616818 tttggagctcacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 26616917  T
Q  312 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616918 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 26617017  T
Q  412 cc 413  Q
    ||    
T  26617018 cc 26617019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 413
Target Start/End: Original strand, 26722546 - 26722947
Alignment:
Q  12 gaagagagaaaagttgaaatnnnnnnnnntattaacataaattaaatcgtgatttacgtaattaccttcatctttacttgtttttaaaaaggaaagttgg 111  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722546 gaagagagaaaagttgaaataaaaaaaaatattaacataaattaaatcgtgatttacgtaattaccttcatctttacttgtttttaaaaaggaaagttgg 26722645  T
Q  112 ggtatttttaatgtttaaacacaaatgatgaagaaagtagcatactaacatttctactattactatattccgcttttaaactttcctattcttgtctgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722646 ggtatttttaatgtttaaacacaaatgatgaagaaagtagcatactaacatttctactattactatattccgcttttaaactttcctattcttgtctgat 26722745  T
Q  212 tttggagctcacagaacaatcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 311  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722746 tttggagctcacagaacaatcatttattttaatttcatgtactatatatactattaatttactctcatgatgtaacagaatgattgcagtagtaaaaatg 26722845  T
Q  312 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722846 aaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 26722945  T
Q  412 cc 413  Q
    ||    
T  26722946 cc 26722947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 339
Target Start/End: Original strand, 26660723 - 26660942
Alignment:
Q  129 aacacaaatgatgaagaaagtagcatactaacatttctactattacta------tattccgcttttaaactttcctattcttgtctgattttggagctca 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||      ||||| |||| | || ||||||||| ||||||||||||||||  ||    
T  26660723 aacacaaatgatgaagaaagtagcatactaacatttctaatattactatactattattctgcttcttaaatttcctatttttgtctgattttggagtcca 26660822  T
Q  223 cagaacaa--tcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaac--agaatgattgc------agtagtaaaaatga 312  Q
    || |||||  ||||||||||||||||       |||||||||| ||| ||||||||||||| |||||  |||| ||||||      ||||||||||||||    
T  26660823 caaaacaacttcatttatttttattt-------tatatatactgttattttactctcatgaagtaacaaagaaagattgcatttatagtagtaaaaatga 26660915  T
Q  313 aaaagtttaagaactcaaatcaataac 339  Q
    |||| | |||||| || ||| ||||||    
T  26660916 aaaaatataagaagtctaataaataac 26660942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 339
Target Start/End: Original strand, 26766694 - 26766913
Alignment:
Q  129 aacacaaatgatgaagaaagtagcatactaacatttctactattacta------tattccgcttttaaactttcctattcttgtctgattttggagctca 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||      ||||| |||| | || ||||||||| ||||||||||||||||  ||    
T  26766694 aacacaaatgatgaagaaagtagcatactaacatttctaatattactatactattattctgcttcttaaatttcctatttttgtctgattttggagtcca 26766793  T
Q  223 cagaacaa--tcatttatttttatttcatgtactatatatactattaatttactctcatgatgtaac--agaatgattgc------agtagtaaaaatga 312  Q
    || |||||  ||||||||||||||||       |||||||||| ||| ||||||||||||| |||||  |||| ||||||      ||||||||||||||    
T  26766794 caaaacaacttcatttatttttattt-------tatatatactgttattttactctcatgaagtaacaaagaaagattgcatttatagtagtaaaaatga 26766886  T
Q  313 aaaagtttaagaactcaaatcaataac 339  Q
    |||| | |||||| || ||| ||||||    
T  26766887 aaaaatataagaagtctaataaataac 26766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 27668995 - 27668866
Alignment:
Q  129 aacacaaatgatgaagaaagtagcatactaacatttctactattacta-tattccgcttttaaactttcctattcttgtctgattttggag-ctcacaga 226  Q
    |||| |||||||||||| ||||| ||||||||||||||| |||||||| ||||| |||| | || |||||||||||||||||||||||||| | ||||||    
T  27668995 aacataaatgatgaagatagtaggatactaacatttctattattactattattctgcttcttaaatttcctattcttgtctgattttggagtcccacaga 27668896  T
Q  227 acaa--tcatttatttttatttcatgtact 254  Q
    ||||   |||||||||||||||||| ||||    
T  27668895 acaactacatttatttttatttcatatact 27668866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 410
Target Start/End: Original strand, 26861059 - 26861167
Alignment:
Q  302 agtaaaaatgaaaaagtttaagaactcaaatcaataacatgccacaagagcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaac 401  Q
    |||| ||||||||||||||||||| || ||| |||||| |||||||||   ||| || |||||||||||||| |||||||||  | || ||||||||| |    
T  26861059 agtataaatgaaaaagtttaagaagtctaattaataacgtgccacaaggaaaacgaaaataatggttctgcaatgattttcattaaagaaaaagttgatc 26861158  T
Q  402 aataattga 410  Q
    |||||||||    
T  26861159 aataattga 26861167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 26811169 - 26811221
Alignment:
Q  360 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc 412  Q
    |||||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  26811169 ataatggttctgcaatgattttcactaaagaaaaagttgaacaataattgatc 26811221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 26974603 - 26974663
Alignment:
Q  352 caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgatc 412  Q
    ||||||| |||||||||||||| ||| |||||| | || ||||||||||||||||||||||    
T  26974603 caacaaaaataatggttctgcaatgagtttcacaaaagaaaaagttgaacaataattgatc 26974663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 26848236 - 26848291
Alignment:
Q  356 aaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 411  Q
    |||||||||||||||||| |||||||||| | || ||||||||| |||||||||||    
T  26848236 aaagataatggttctgcaatgattttcactaaagaaaaagttgagcaataattgat 26848291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 26810582 - 26810630
Alignment:
Q  129 aacacaaatgatgaagaaagtagcatactaacatttctactattactat 177  Q
    ||||| ||||||||||  ||| |||||||||||||||||||||||||||    
T  26810582 aacacgaatgatgaaggtagtggcatactaacatttctactattactat 26810630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 409
Target Start/End: Original strand, 26958791 - 26958848
Alignment:
Q  352 caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg 409  Q
    ||||||| |||||||||||| | ||| |||||| | || |||||||||||||||||||    
T  26958791 caacaaaaataatggttctgtaatgagtttcacaaaagaaaaagttgaacaataattg 26958848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Complemental strand, 27667911 - 27667862
Alignment:
Q  360 ataatggttctgcagtgattttcaccacagtaaaagttgaacaataattg 409  Q
    ||||||||||||||||| ||||||  | || |||||||||||||||||||    
T  27667911 ataatggttctgcagtgtttttcagtaaagaaaaagttgaacaataattg 27667862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 411
Target Start/End: Complemental strand, 27310371 - 27310311
Alignment:
Q  351 gcaacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 411  Q
    |||||||  ||||||||||| || |||||||||| | || ||||||||||| |||||||||    
T  27310371 gcaacaagaataatggttcttcaatgattttcactaaagaaaaagttgaacgataattgat 27310311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 18823839 - 18823918
Alignment:
Q  41 tattaacataaattaaatcgtgatttacgtaattaccttcatctttacttgtttttaaaaaggaaagttggggtattttt 120  Q
    ||||||||||||||||||| ||||||| ||| ||||| |  | |||| |||||||| |||||||||||||||||||||||    
T  18823839 tattaacataaattaaatcatgatttatgtatttacccttctttttaattgtttttcaaaaggaaagttggggtattttt 18823918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 18823311 - 18823239
Alignment:
Q  44 taacataaattaaatcgtgatttacgtaatta-ccttcatctttacttgtttttaaaaaggaaagttggggta 115  Q
    |||||||||||||||| |||||||| || ||| ||||| ||| || |||||||  |||||||||| |||||||    
T  18823311 taacataaattaaatcatgatttacatatttacccttcttctctaattgttttccaaaaggaaagctggggta 18823239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 18343275 - 18343355
Alignment:
Q  41 tattaacataaattaaatcgtgatttacgtaattacc-ttcatctttacttgtttttaaaaaggaaagttggggtattttt 120  Q
    |||||||| |||||||| | |||||||| || || || ||||| | ||||||||||||||||||||||||||||| |||||    
T  18343275 tattaacacaaattaaaccatgatttacatatttgcccttcatttctacttgtttttaaaaaggaaagttggggtgttttt 18343355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 17994315 - 17994256
Alignment:
Q  352 caacaaagataatggttctgcagtgattttcaccacagtaaaagttgaacaataattgat 411  Q
    ||||||| |||||||||||||| |||||||||  | || |||||||||||||||||||||    
T  17994315 caacaaaaataatggttctgcaatgattttcagtaaagaaaaagttgaacaataattgat 17994256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University