View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_high_5 (Length: 413)
Name: NF19067_high_5
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 11173043 - 11172655
Alignment:
| Q |
9 |
agcaaaggaccgtgtgaaattgaaattaaactatactaataaattggtttgtgagattgttcatgattgttatatgtttccactaacttcttcagatcca |
108 |
Q |
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| T |
11173043 |
agcataggaccgtgtgaaattgaaattaaactatactaataaattggtttgtgagattgttcatgattgttatatgtttccactaacttcttcagatcca |
11172944 |
T |
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| Q |
109 |
agaaacagtgttgagagctcaacagttttcttgttttctgtacaacagtatcactaagaaaaacagagaagaaaccctgtttctttaacaaaacagtaat |
208 |
Q |
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| T |
11172943 |
agaaacagtgctgagagctcaacagttttcttgttttctgtacaacagtatcactaagaaaaacagagaagaaaccctgtttctttaacaaaacagtaat |
11172844 |
T |
|
| Q |
209 |
tagccaaactatagtatatatgcatttcaaattcacatttatagtgttgaagttgaagctcttctataattcatttaggttaaacaggaagaggtcgcct |
308 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11172843 |
tagccaaactatagtatatatgcatttcaaatccacatttatagtgttgaagttgaagctcttctataattcatttaggttaaacaggaagaggtcgcct |
11172744 |
T |
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| Q |
309 |
gtttatattcaaatgcacatattcacacgcatgtgtatgcatcagtaactcactcaccattaggttaaacatataaagtatatatatgg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11172743 |
gtttatattcaaatgcacatattcacacgcatgtgtatgcatcagtaactcactcaccattaggttaaacatataaagtatatatatgg |
11172655 |
T |
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