View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_high_7 (Length: 390)

Name: NF19067_high_7
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_high_7
NF19067_high_7
[»] chr7 (12 HSPs)
chr7 (310-376)||(37325853-37325919)
chr7 (342-390)||(2469706-2469754)
chr7 (342-390)||(22330640-22330688)
chr7 (342-390)||(37351999-37352047)
chr7 (342-390)||(41985109-41985157)
chr7 (336-387)||(23680050-23680101)
chr7 (337-390)||(25887592-25887645)
chr7 (342-390)||(237027-237075)
chr7 (342-390)||(7817652-7817700)
chr7 (330-390)||(11352982-11353042)
chr7 (342-390)||(26041324-26041372)
chr7 (342-390)||(31274549-31274597)
[»] chr4 (20 HSPs)
chr4 (342-390)||(28676161-28676209)
chr4 (342-390)||(39241310-39241358)
chr4 (340-390)||(29974336-29974386)
chr4 (340-390)||(49241972-49242022)
chr4 (337-390)||(32621636-32621689)
chr4 (342-390)||(4511828-4511876)
chr4 (342-390)||(30778273-30778321)
chr4 (336-390)||(30973594-30973648)
chr4 (336-390)||(31657655-31657709)
chr4 (340-390)||(48326553-48326603)
chr4 (337-390)||(2109441-2109494)
chr4 (336-376)||(1796363-1796403)
chr4 (342-390)||(5386387-5386435)
chr4 (342-390)||(11997688-11997736)
chr4 (342-390)||(28657449-28657497)
chr4 (342-386)||(32365680-32365724)
chr4 (342-390)||(42490923-42490971)
chr4 (342-390)||(43769726-43769774)
chr4 (342-390)||(46173553-46173601)
chr4 (342-390)||(54036538-54036586)
[»] chr3 (5 HSPs)
chr3 (339-390)||(31997813-31997864)
chr3 (336-390)||(47683798-47683852)
chr3 (342-390)||(35554124-35554172)
chr3 (342-390)||(43169762-43169810)
chr3 (342-390)||(49761322-49761370)
[»] chr5 (9 HSPs)
chr5 (336-390)||(6865796-6865850)
chr5 (342-390)||(33567232-33567280)
chr5 (336-378)||(36548412-36548454)
chr5 (341-390)||(1839353-1839402)
chr5 (342-390)||(372729-372777)
chr5 (342-390)||(13734369-13734417)
chr5 (342-390)||(14206403-14206451)
chr5 (339-387)||(21210830-21210878)
chr5 (342-390)||(30334775-30334823)
[»] chr2 (12 HSPs)
chr2 (336-390)||(37966364-37966418)
chr2 (325-390)||(7121376-7121441)
chr2 (342-390)||(25801822-25801870)
chr2 (327-388)||(3012856-3012917)
chr2 (339-376)||(39454273-39454310)
chr2 (339-388)||(44422978-44423027)
chr2 (342-390)||(6646838-6646886)
chr2 (334-390)||(9834090-9834146)
chr2 (342-390)||(28013970-28014018)
chr2 (342-390)||(29795450-29795498)
chr2 (342-390)||(32972915-32972963)
chr2 (338-390)||(36212067-36212119)
[»] chr1 (16 HSPs)
chr1 (342-390)||(5477172-5477220)
chr1 (342-390)||(40596063-40596111)
chr1 (342-390)||(41507203-41507251)
chr1 (342-390)||(49453494-49453542)
chr1 (336-390)||(49241513-49241567)
chr1 (337-390)||(43757597-43757650)
chr1 (342-390)||(8200090-8200138)
chr1 (342-390)||(11597651-11597699)
chr1 (342-390)||(27687528-27687576)
chr1 (342-390)||(33358167-33358215)
chr1 (342-390)||(40139129-40139177)
chr1 (342-390)||(45065910-45065958)
chr1 (342-390)||(45272169-45272217)
chr1 (342-390)||(48220152-48220200)
chr1 (330-386)||(50153990-50154046)
chr1 (342-390)||(50797794-50797842)
[»] scaffold0514 (1 HSPs)
scaffold0514 (342-376)||(1530-1564)
[»] chr8 (10 HSPs)
chr8 (330-376)||(6656379-6656425)
chr8 (330-376)||(6736781-6736827)
chr8 (340-390)||(11138908-11138958)
chr8 (348-390)||(36178269-36178311)
chr8 (337-386)||(5502369-5502418)
chr8 (342-390)||(1796499-1796547)
chr8 (342-390)||(14710902-14710950)
chr8 (342-390)||(30439514-30439562)
chr8 (342-390)||(37392137-37392185)
chr8 (342-390)||(39211056-39211104)
[»] scaffold0054 (1 HSPs)
scaffold0054 (342-390)||(31609-31657)
[»] chr6 (4 HSPs)
chr6 (342-390)||(2060642-2060690)
chr6 (342-390)||(12177580-12177628)
chr6 (342-390)||(12441541-12441589)
chr6 (342-390)||(28748127-28748175)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 37325919 - 37325853
Alignment:
Q  310 atataagtatctatgatacatttttcttagaaaaatgatatttgcataaccaatttgtgacaacttt 376  Q
    ||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  37325919 atataagtatctatgatacatttttcttaaagaaatgatatttgtacaaccaatttgtgacaacttt 37325853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 2469706 - 2469754
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  2469706 aaatgatatttgtacaaccactttgtgacaactttctctctcatactca 2469754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 22330688 - 22330640
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  22330688 aaatgatatttgtacaaccactttgtgacaactttctctctcatactca 22330640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 37352047 - 37351999
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  37352047 aaatgatatttgtacaaccactttgtgacaactttctctctcatactca 37351999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 41985157 - 41985109
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | || ||||||||||||||||||||| |||||||||    
T  41985157 aaatgatatttgtacaatcaatttgtgacaactttctctctcatactca 41985109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 23680101 - 23680050
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatac 387  Q
    |||||||||||||||||| | ||| | |||||||||||||||| ||||||||    
T  23680101 ttagaaaaatgatatttgtacaactattttgtgacaactttctttttcatac 23680050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 25887592 - 25887645
Alignment:
Q  337 tagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||| |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  25887592 tagagaaatgatatttgtacatccactttgtgacaactttctctctcatactca 25887645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 237027 - 237075
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | || ||||||||||||||||| ||| |||||||||    
T  237027 aaatgatatttgtacaatcaatttgtgacaactttatctctcatactca 237075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 7817652 - 7817700
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  7817652 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 7817700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 11353042 - 11352982
Alignment:
Q  330 tttttcttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||| ||| |||||||||||| | | | | |||||||||||||||||| |||||||||    
T  11353042 tttttctaagagaaatgatatttgaacatcaattttgtgacaactttctctctcatactca 11352982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 26041324 - 26041372
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||| | | ||||| ||| ||||||||||||||||||||||||    
T  26041324 aaatgatattcgtacaaccattttatgacaactttctctttcatactca 26041372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 31274597 - 31274549
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | |||||||||||||||||||| ||| | |||||||    
T  31274597 aaatgatatttgtacaaccaatttgtgacaactttttctcttatactca 31274549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 28676209 - 28676161
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  28676209 aaatgatatttgtacaaccattttgtgacaactttctctttcatactca 28676161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 39241358 - 39241310
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | |||||||||||||||||||||||| |||||||||    
T  39241358 aaatgatatttgtacaaccaatttgtgacaactttctctctcatactca 39241310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 29974386 - 29974336
Alignment:
Q  340 aaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||||| | ||| | ||||||||||||||||||||||||||||    
T  29974386 aaaaatgatatttgaacaactattttgtgacaactttctctttcatactca 29974336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 49242022 - 49241972
Alignment:
Q  340 aaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||||| |||| || ||||| ||||||||||||||||||||||    
T  49242022 aaaaatgatatttgaataatcattttgtcacaactttctctttcatactca 49241972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 32621636 - 32621689
Alignment:
Q  337 tagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||| |||||||||||||| ||||| |||||||||||||||||| | |||||||    
T  32621636 tagagaaatgatatttgcacaaccattttgtgacaactttctctctaatactca 32621689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 4511828 - 4511876
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| ||||||| ||| |||||||||||||| |||||||||    
T  4511828 aaatgatatttgtataaccattttatgacaactttctctctcatactca 4511876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 30778321 - 30778273
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | |||||||||||||||||||||| |||||||||    
T  30778321 aaatgatatttgtacagccaatttgtgacaactttctctctcatactca 30778273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 30973594 - 30973648
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||||||||| | ||||| ||| |||||||||| |||||||||||||    
T  30973594 ttagagaaatgatatttgtacaaccactttatgacaactttttctttcatactca 30973648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 31657655 - 31657709
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  31657655 ttagagaaatgatatttgaacatccattttgtgacaactttctctctcatactca 31657709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 48326553 - 48326603
Alignment:
Q  340 aaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||||| | ||||| |||||||||||||| ||| |||||||||    
T  48326553 aaaaatgatatttgtacaaccactttgtgacaactttttctctcatactca 48326603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 2109441 - 2109494
Alignment:
Q  337 tagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||| |||||||||||| | |||||  || ||||||||||||||||||||||||    
T  2109441 tagagaaatgatatttgtacaaccatcttttgacaactttctctttcatactca 2109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 1796363 - 1796403
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaacttt 376  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  1796363 ttagagaaatgatatttgtacaaccaatttgtgacaacttt 1796403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 5386387 - 5386435
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  5386387 aaatgatatttgaacaaccattttttgacaactttctctctcatactca 5386435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 11997688 - 11997736
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||| | |||||||||||    
T  11997688 aaatgatatttgtacaaccactttgtgacaactttatttttcatactca 11997736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 28657497 - 28657449
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  28657497 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 28657449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 32365724 - 32365680
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcata 386  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||    
T  32365724 aaatgatatttgtacaaccattttgtgacaactttctctctcata 32365680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 42490923 - 42490971
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  42490923 aaatgatatttgtacaaccactttttgacaactttctctctcatactca 42490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 43769726 - 43769774
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  43769726 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 43769774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 46173553 - 46173601
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| || ||||||    
T  46173553 aaatgatatttgtacaaccactttgtgacaactttctctctcgtactca 46173601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 54036586 - 54036538
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||| ||| |||||||||    
T  54036586 aaatgatatttgtacaaccattttgtgacaactttatctctcatactca 54036538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 390
Target Start/End: Original strand, 31997813 - 31997864
Alignment:
Q  339 gaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||||||||||| | ||||| |||||||||||||||| |||||||||||    
T  31997813 gaaaaatgatatttgtacaaccactttgtgacaactttctttttcatactca 31997864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 47683798 - 47683852
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  47683798 ttagagaaatgatatttgtacaaccattttgtgacaactttctctctcatactca 47683852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 35554172 - 35554124
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| |||| || ||| |||||||||||||| |||||||||    
T  35554172 aaatgatatttgtataatcactttttgacaactttctctctcatactca 35554124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 43169810 - 43169762
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||| ||| |||||||||    
T  43169810 aaatgatatttgtacaaccattttgtgacaactttttctctcatactca 43169762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 49761322 - 49761370
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  49761322 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 49761370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 6865850 - 6865796
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  6865850 ttagagaaatgatatttgtacaaccactttgtgacaactttctctctcatactca 6865796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 33567280 - 33567232
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  33567280 aaatgatatttgtacaaccactttgtgacaactttctctctcatactca 33567232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 36548454 - 36548412
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttct 378  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||    
T  36548454 ttagagaaatgatatttgtataaccattttgtgacaactttct 36548412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 1839402 - 1839353
Alignment:
Q  341 aaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  1839402 aaaatgatatttgaacatccattttgtgacaactttctctctcatactca 1839353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 372777 - 372729
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||| |||| | ||||| |||||||||||||||||| |||||||||    
T  372777 aaatgatttttgtacaaccattttgtgacaactttctctctcatactca 372729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 13734417 - 13734369
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  13734417 aaatgatatttgtacaaccactttatgacaactttctctctcatactca 13734369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 14206403 - 14206451
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  14206403 aaatgatatttgtacaaccattttttgacaactttctctctcatactca 14206451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 21210830 - 21210878
Alignment:
Q  339 gaaaaatgatatttgcataaccaatttgtgacaactttctctttcatac 387  Q
    ||||||||||||||| | ||||| ||| |||||||||||||| ||||||    
T  21210830 gaaaaatgatatttgaacaaccactttttgacaactttctctctcatac 21210878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 30334823 - 30334775
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||| |||||||||||||||||    
T  30334823 aaatgatatttgtacaaccactttatgacaattttctctttcatactca 30334775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 37966364 - 37966418
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||||||||| | |||||||||||||||||||| ||| |||||||||    
T  37966364 ttagagaaatgatatttgtacaaccaatttgtgacaactttttctctcatactca 37966418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 7121376 - 7121441
Alignment:
Q  325 atacatttttcttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||  || || |||||||||||| ||||||| ||||| |||||||||||| |||||||||    
T  7121376 atacattttcttttgagaaatgatatttgtataaccattttgtaacaactttctctctcatactca 7121441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 25801870 - 25801822
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | |||||||||||||||||||| ||| |||||||||    
T  25801870 aaatgatatttgtacaaccaatttgtgacaactttatctctcatactca 25801822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 3012917 - 3012856
Alignment:
Q  327 acatttttcttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatact 388  Q
    |||||||| | ||| |||||||||||| | | ||| |||||||||||||||||| |||||||    
T  3012917 acatttttttaagagaaatgatatttgaacatccattttgtgacaactttctctctcatact 3012856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 39454310 - 39454273
Alignment:
Q  339 gaaaaatgatatttgcataaccaatttgtgacaacttt 376  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  39454310 gaaaaatgatatttgtataaccattttgtgacaacttt 39454273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 44422978 - 44423027
Alignment:
Q  339 gaaaaatgatatttgcataaccaatttgtgacaactttctctttcatact 388  Q
    ||||||||||||||| | ||||| ||| | ||||||||||||||||||||    
T  44422978 gaaaaatgatatttgtacaaccactttttaacaactttctctttcatact 44423027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 6646838 - 6646886
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  6646838 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 6646886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 9834146 - 9834090
Alignment:
Q  334 tcttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||| |||||||||||  | ||||| ||| |||||||| |||||||||||||||    
T  9834146 tcttagagaaatgatatttatacaaccattttatgacaactatctctttcatactca 9834090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 28013970 - 28014018
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||| ||||||| | ||||||||| |||||||||||||| |||||||||    
T  28013970 aaattatatttgtacaaccaatttttgacaactttctctctcatactca 28014018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 29795450 - 29795498
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||||||||||||||||||  ||||||||    
T  29795450 aaatgatatttgtacaaccattttgtgacaactttctctcacatactca 29795498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 32972963 - 32972915
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  32972963 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 32972915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 36212119 - 36212067
Alignment:
Q  338 agaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||||||||| || | | ||| |||||||||||||| |||||||||||||    
T  36212119 agaaaaatgatatctgaacatccattttgtgacaactttatctttcatactca 36212067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 5477220 - 5477172
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  5477220 aaatgatatttgtacaaccactttgtgacaactttctctctcatactca 5477172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 40596111 - 40596063
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  40596111 aaatgatatttgtacaaccattttgtgacaactttctctctcatactca 40596063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 41507251 - 41507203
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  41507251 aaatgatatttgtacaaccattttgtgacaactttctctctcatactca 41507203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 49453494 - 49453542
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||||| |||||||||    
T  49453494 aaatgatatttgtacaaccactttgtgacaactttctctctcatactca 49453542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 49241567 - 49241513
Alignment:
Q  336 ttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  49241567 ttagagaaatgatatttgaacatccactttgtgacaactttctctctcatactca 49241513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 43757597 - 43757650
Alignment:
Q  337 tagaaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||| |||||||||||| | ||||| ||||  ||||||||||||||||||||||    
T  43757597 tagagaaatgatatttgtacaaccattttgatacaactttctctttcatactca 43757650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 8200090 - 8200138
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  8200090 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 8200138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 11597651 - 11597699
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||||||| || | ||||||||||||||||||||||||  ||||||||    
T  11597651 aaatgatatctgtacaaccaatttgtgacaactttctctgccatactca 11597699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 27687576 - 27687528
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||| ||| |||||||||    
T  27687576 aaatgatatttgtacaaccattttgtgacaactttatctctcatactca 27687528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 33358215 - 33358167
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  33358215 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 33358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 40139129 - 40139177
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  40139129 aaatgatatttgtacaaccattttatgacaactttctctctcatactca 40139177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 45065958 - 45065910
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  45065958 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 45065910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 45272217 - 45272169
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  45272217 aaatgatatttgtacaaccactttttgacaactttctctctcatactca 45272169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 48220200 - 48220152
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  48220200 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 48220152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 50154046 - 50153990
Alignment:
Q  330 tttttcttagaaaaatgatatttgcataaccaatttgtgacaactttctctttcata 386  Q
    ||||| ||||||||||||||| || ||||| |||||||||||| ||| ||| |||||    
T  50154046 ttttttttagaaaaatgatatgtgtataactaatttgtgacaattttttctctcata 50153990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 50797794 - 50797842
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | || || |||||||||||||||||| |||||||||    
T  50797794 aaatgatatttgtacaatcattttgtgacaactttctctctcatactca 50797842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 1564 - 1530
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaacttt 376  Q
    |||||||||||| ||||||||||||||||||||||    
T  1564 aaatgatatttgtataaccaatttgtgacaacttt 1530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 6656425 - 6656379
Alignment:
Q  330 tttttcttagaaaaatgatatttgcataaccaatttgtgacaacttt 376  Q
    ||||| || ||||||||||||||| | ||||||||||||||||||||    
T  6656425 tttttttttgaaaaatgatatttgtagaaccaatttgtgacaacttt 6656379  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 6736827 - 6736781
Alignment:
Q  330 tttttcttagaaaaatgatatttgcataaccaatttgtgacaacttt 376  Q
    ||||| || ||||||||||||||| | ||||||||||||||||||||    
T  6736827 tttttttttgaaaaatgatatttgtagaaccaatttgtgacaacttt 6736781  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 11138908 - 11138958
Alignment:
Q  340 aaaaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||||| | ||| | |||||||||||||||||| |||||||||    
T  11138908 aaaaatgatatttgtacaactattttgtgacaactttctctctcatactca 11138958  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 36178311 - 36178269
Alignment:
Q  348 tatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||| | |||||||||||||||||||||||| |||||||||    
T  36178311 tatttgtacaaccaatttgtgacaactttctctctcatactca 36178269  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 5502369 - 5502418
Alignment:
Q  337 tagaaaaatgatatttgcataaccaatttgtgacaactttctctttcata 386  Q
    |||| |||||||||||| | ||||| |||||||||||||||||| |||||    
T  5502369 tagagaaatgatatttgtacaaccactttgtgacaactttctctctcata 5502418  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 1796499 - 1796547
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| |||||||||||||||| | |||||||||    
T  1796499 aaatgatatttgtacaaccactttgtgacaactttctttctcatactca 1796547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 14710950 - 14710902
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | || || |||||||||||||||||| |||||||||    
T  14710950 aaatgatatttgtacaatcattttgtgacaactttctctctcatactca 14710902  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 30439562 - 30439514
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  30439562 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 30439514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 37392185 - 37392137
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  37392185 aaatgatatttgtacaaccattttttgacaactttctctctcatactca 37392137  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 39211056 - 39211104
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  39211056 aaatgatatttgaacaaccattttttgacaactttctctctcatactca 39211104  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 31657 - 31609
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  31657 aaatgatatttgtacaaccattttttgacaactttctctctcatactca 31609  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 2060690 - 2060642
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| ||||||| ||| |||||||||| ||| |||||||||    
T  2060690 aaatgatatttgaataaccattttatgacaactttttctctcatactca 2060642  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 12177580 - 12177628
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    ||||| |||||| | ||| | ||||||||||||||||||||||||||||    
T  12177580 aaatgttatttgtacaactattttgtgacaactttctctttcatactca 12177628  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 12441541 - 12441589
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | ||| | |||||||||||||||||| |||||||||    
T  12441541 aaatgatatttgtacaactactttgtgacaactttctctctcatactca 12441589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 28748127 - 28748175
Alignment:
Q  342 aaatgatatttgcataaccaatttgtgacaactttctctttcatactca 390  Q
    |||||||||||| | | ||| |||||||||||||||||| |||||||||    
T  28748127 aaatgatatttgaacatccattttgtgacaactttctctctcatactca 28748175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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