View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_low_1 (Length: 667)

Name: NF19067_low_1
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_low_1
NF19067_low_1
[»] chr6 (1 HSPs)
chr6 (16-667)||(898179-898828)


Alignment Details
Target: chr6 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 16 - 667
Target Start/End: Complemental strand, 898828 - 898179
Alignment:
Q  16 agttttgttgtcagatatatagagatgcagggaatggagagtggcagacaacatgcgagcctccagtgcaagacgatatataggggtcgtggtatttgac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898828 agttttgttgtcagatatatagagatgcagggaatggagagtggcagacaacatgcgagcctccagtgcaagacgatatataggggtcgtggtatttgac 898729  T
Q  116 aatcaactagagcttctgcttcctggaggcagttgtgagcatcaagattagaggagaaagaatcggtcgaacaaaatctcagagagtgacatcaaagacg 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898728 aatcaactagagcttctgcttcctggaggcagttgcgagcatcaagattagaggagaaagaatcggtcgaacaaaatctcagagagtgacatcaaagacg 898629  T
Q  216 agatgttgtgtaaactttaatgcattggagaaaggttttcttgggggaagagcactaagaacataggctagtaggaccaaggtttcaatgattcagaaga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898628 agatgttgtgtaaactttaatgcattggagaaaggttttcttgggggaagagcactaagaacataggctagtaggaccaaggtttcaatgattcagaaga 898529  T
Q  316 gacagagtatgtgcataattattttaggccaatgaaggcaccaaatttgagatcaagagatgggggtggtattggcacctctctatgtcaaaattcaggt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  898528 gacagagtatgtgcataattattttaggccaatgaaggcaccaaatttgagatcaagagatgggggtggtattggcac--ctctatgtcaaaattcaggt 898431  T
Q  416 aaaaccgaccttggttgtgtcgaaaaagttggaattgttcggccaaatataaaacattttctctattgggattgaaatctggacaaaggttaataatttc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898430 aaaaccgaccttggttgtgtcgaaaaagttggaattgttcggccaaatataaaacattttctctattgggattgaaatctggacaaaggttaataatttc 898331  T
Q  516 gtctatgatggtttgaggtagctgagtatagggggtttcaaaattaagagtgctacattttgtttttgatcccaagagaatatcaactatcgatgagttg 615  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  898330 gtctatgatggtttgaggtagctgagtatagagggtttcaaaattaagagtgctacattttgtttttgatcccaacagaatatcaactatcgatgagttg 898231  T
Q  616 aacaatgcctttagttttgggtatagcgaaagagggatcatcaaaatttacc 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898230 aacaatgcctttagttttgggtatagcgaaagagggatcatcaaaatttacc 898179  T

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