View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19067_low_10 (Length: 335)
Name: NF19067_low_10
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_10 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
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| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 42794390 - 42794059
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794390 |
gcatcgcgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
42794291 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
203 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794290 |
ctatgtagatagtgtgcgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
42794191 |
T |
|
| Q |
204 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794190 |
attcggcctttggaaatccgcttcaaatatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgctt |
42794091 |
T |
|
| Q |
304 |
gtcccaaccatttttctcttaaggttattgga |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42794090 |
atcccaaccatttttctcttaaggttattgga |
42794059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 46428460 - 46428129
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46428460 |
gcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgattcaaccttcctgaggtcgtttccatc |
46428361 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428360 |
ctatgtagatagtgtctgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
46428261 |
T |
|
| Q |
204 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgctt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
46428260 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacatagtcataaaggtggtctgccatctagatgtgttt |
46428161 |
T |
|
| Q |
304 |
gtcccaaccatttttctcttaaggttattgga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
46428160 |
gtcccaaccatttttctcttaaggttattgga |
46428129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 54812543 - 54812874
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54812543 |
gcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgccgttgagcttgatccaaccttcctgaggtcgtttccatc |
54812642 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54812643 |
ctatgtagatagtgtccgtcaacttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
54812742 |
T |
|
| Q |
204 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54812743 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaatatcaacacgtagtcataaaggtggtctgccatctacatgtgctt |
54812842 |
T |
|
| Q |
304 |
gtcccaaccatttttctcttaaggttattgga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54812843 |
gtcccaaccatttttctcttaaggttattgga |
54812874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 43912548 - 43912791
Alignment:
| Q |
5 |
catctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcc |
104 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43912548 |
catcacgaaaaatatcaccacaaccgaaaatatgacccatatccttgcaggcatcgtcactgttgagcttgatccaacctttctgaggtcgtttccatcc |
43912647 |
T |
|
| Q |
105 |
tatgtagatagt-----gtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
199 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
43912648 |
tatgtagatagtattacttccttcaccttaggccctctatgaaggtactccaagttgtagtcttcaatatccctaacgaatctttggattaatatattta |
43912747 |
T |
|
| Q |
200 |
gattattcggcctttggaaatccgcttcaaagatagtcttgttc |
243 |
Q |
| |
|
|||| ||| |||||| |||||| ||||||||||||| |||||| |
|
|
| T |
43912748 |
gattgttcagcctttagaaatcaacttcaaagatagttttgttc |
43912791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 54346603 - 54346530
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| ||||| |
|
|
| T |
54346603 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat |
54346530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 22065496 - 22065828
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22065496 |
gcatcacgaaaaataccaccacaaccgaaaatatgacccatatccttgcaggcaccgtcactgttgagcttgatccaaccttcctgaggtcgtttccatc |
22065595 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtata-tttggat |
202 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22065596 |
ctatgtagatagtgttcgtcaccttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatattttggat |
22065695 |
T |
|
| Q |
203 |
tattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
22065696 |
tattcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacatagtcataaaggtggtatgtcatctagatgtgct |
22065795 |
T |
|
| Q |
303 |
tgtcccaaccatttttctcttaaggttattgga |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22065796 |
tgtcccaaccatttttctcttaaggttattgga |
22065828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 23085242 - 23085315
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
23085242 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagat |
23085315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 5308510 - 5308437
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| ||||| |
|
|
| T |
5308510 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat |
5308437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 23949566 - 23949493
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| ||||| |
|
|
| T |
23949566 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat |
23949493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 50952899 - 50952972
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| ||||| |
|
|
| T |
50952899 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat |
50952972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 1223263 - 1223587
Alignment:
| Q |
10 |
cgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgt |
109 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1223263 |
cgaaaaataccaccacaatcggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgt |
1223362 |
T |
|
| Q |
110 |
agatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcgg |
209 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
1223363 |
agatagtgtctgtaaccttaggccctctatgaaagagctccaggttgtagtcttcaatatctctaacaaatgtttgg-ttagtatatttggattattcgg |
1223461 |
T |
|
| Q |
210 |
cctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgcttgtccca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1223462 |
cctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgcttgtccca |
1223561 |
T |
|
| Q |
310 |
accatttttctcttaaggttattgga |
335 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
1223562 |
accatttttctcttaaggtcattgga |
1223587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 24473352 - 24473021
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| ||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
24473352 |
gcatcacgaaaaataccaccaaacccagaaatatgacccatatccttgcaggcatcgtcgctgttgagcttgatccaactatcctgaggttgtttccatc |
24473253 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
203 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24473252 |
ctatgtagataatgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
24473153 |
T |
|
| Q |
204 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24473152 |
attcggcctttggaaatccgcttcaaatatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtatgccatctagatgtgctt |
24473053 |
T |
|
| Q |
304 |
gtcccaaccatttttctcttaaggttattgga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24473052 |
gtcccaaccatttttctcttaaggttattgga |
24473021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 24472654 - 24472740
Alignment:
| Q |
42 |
catatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcacctt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
24472654 |
catatccttgcaggcaccgtcgctgttgagcttgatccaactatcctgaggttgtttccatcctatgtagataatgtccgtcacctt |
24472740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 29214059 - 29214190
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctctat |
139 |
Q |
| |
|
||||||| |||||| ||||| || || |||||||||||||||||||| |||| || ||||| ||||| |||||| | ||| ||| ||| || || ||| |
|
|
| T |
29214059 |
cccatattcttgcaagcaccatcactattgagcttgatccaaccttcatgagaccgcttccaacctatatagataatttccttcaactttggaccaatat |
29214158 |
T |
|
| Q |
140 |
gaaagtgctccaagttgtagtcttcaatatct |
171 |
Q |
| |
|
|||| |||||||| || |||||||||||||| |
|
|
| T |
29214159 |
gaaaatgctccaaattacagtcttcaatatct |
29214190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 28395677 - 28395757
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtcc |
120 |
Q |
| |
|
|||||||||||||| || || || || |||||||||||||||||||| || ||| | ||||||| |||||||||| ||||| |
|
|
| T |
28395677 |
cccatatccttgcatgcgccatcactattgagcttgatccaaccttcttgtggttgcttccatcatatgtagataatgtcc |
28395757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 25713334 - 25713261
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
||||| |||||||| ||| | || ||||||||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
25713334 |
cccatgtccttgcaagcatcatcactgttgagcttgatccaaccttcttgaggccgcttccaacctatatagat |
25713261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 8020075 - 8020148
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| ||||| |
|
|
| T |
8020075 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat |
8020148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 48618802 - 48618729
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
|||||| ||||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
48618802 |
cccataaccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagat |
48618729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 44145609 - 44145292
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145609 |
gcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
44145510 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44145509 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttgg--------------att |
44145424 |
T |
|
| Q |
204 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
44145423 |
attcggcctttggaaatccgcttcaaagatagtcttgttcctccatttccacaaataacaacacgtagtcataaaggtggtatgccatctaaatgtgctt |
44145324 |
T |
|
| Q |
304 |
gtcccaaccatttttctcttaaggttattgga |
335 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
44145323 |
gtcccaaccatatttctcttaaggttattgga |
44145292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 38560904 - 38560962
Alignment:
| Q |
45 |
atccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
38560904 |
atccttgcaggcaccgtcactgctgagtttgatccaaccttcctgaggttgttaccatc |
38560962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 1635863 - 1635793
Alignment:
| Q |
43 |
atatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
113 |
Q |
| |
|
||||||||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
1635863 |
atatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagat |
1635793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 47597885 - 47598118
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
47597885 |
gcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagtttgatccaaccttcttgaggtcgtttccatc |
47597984 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
203 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47597985 |
ctatgtagataatgtctgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggatt |
47598084 |
T |
|
| Q |
204 |
attcggcctttggaaatccgcttcaaagatagtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47598085 |
attcggcctttggaaatccgcttcaaagatagtc |
47598118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 34390136 - 34390210
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagata |
114 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| |||||| |
|
|
| T |
34390136 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagata |
34390210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 18883273 - 18882955
Alignment:
| Q |
15 |
aatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagata |
114 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18883273 |
aataccaccacaaccggaaatatgacctagatccttggaggcaccgtcgttgttgagcttgatccaaccttcctgaggtcgtttccatcctatgaagata |
18883174 |
T |
|
| Q |
115 |
gtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggccttt |
214 |
Q |
| |
|
|| ||| |||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||| | | || || ||||||||||||||| ||||||| |
|
|
| T |
18883173 |
gtctccttcaccttaggccctatatgaaggtgctccaagttttagtcttcaatatctttaacgaatctctagactaatatatttggattatttggccttt |
18883074 |
T |
|
| Q |
215 |
ggaaatccgcttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgccatctagatgtgcttgtcccaaccat |
314 |
Q |
| |
|
||||||| | || ||||||||| |||||| ||||||||||||||||| | || ||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
18883073 |
ggaaatcaggtttaaagatagttttgttcttccatttccacaaatactagtacatagtcatgaaggtggtctgtcatctagatgtgctcgtcccaaccat |
18882974 |
T |
|
| Q |
315 |
ttttctcttaaggttattg |
333 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
18882973 |
tttcctcttaaggttattg |
18882955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 4560609 - 4560769
Alignment:
| Q |
4 |
gcatctcgaataatatcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
103 |
Q |
| |
|
||||| |||| |||| |||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560609 |
gcatcacgaaaaataccaccacaattgaaaatatgacccatatccttgcaggcaccatcgctgtcgagcttgatccaaccttcctgaggtcgtttccatc |
4560708 |
T |
|
| Q |
104 |
ctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttc |
164 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4560709 |
ctatgtagatagtgtccgccaccttaggccctttatgaaagtgctccaagttgtagtcttc |
4560769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 171
Target Start/End: Original strand, 34081069 - 34081200
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctctat |
139 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||||| ||||| ||||| | ||| ||| ||| || || ||| |
|
|
| T |
34081069 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgatttccttcaactttggaccaatat |
34081168 |
T |
|
| Q |
140 |
gaaagtgctccaagttgtagtcttcaatatct |
171 |
Q |
| |
|
||| ||||||||||| | |||||||||||| |
|
|
| T |
34081169 |
gaatatgctccaagttacaatcttcaatatct |
34081200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 355794 - 355705
Alignment:
| Q |
18 |
atcaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctat |
107 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||| ||||| || |||||||||||||| ||||||| || ||| | || |||||||| |
|
|
| T |
355794 |
atcaccacaatccaaaatatgacccctatccttgcatgcaccatcattgttgagcttgatcgaaccttcttgtggttgctttcatcctat |
355705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 7305413 - 7305465
Alignment:
| Q |
40 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgagg |
92 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||||||||||||||| ||||| |
|
|
| T |
7305413 |
cccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgagg |
7305465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 40196717 - 40196849
Alignment:
| Q |
39 |
acccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctcta |
138 |
Q |
| |
|
|||||||| |||||| ||||| | |||||||||||||||||||||| |||| || ||||| ||||| ||||| |||| ||| ||| || || || |
|
|
| T |
40196717 |
acccatattcttgcaagcaccaccattgttgagcttgatccaaccttctcgaggccgcttccaacctatatagatgatgtctttcaactttggaccaata |
40196816 |
T |
|
| Q |
139 |
tgaaagtgctccaagttgtagtcttcaatatct |
171 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| |
|
|
| T |
40196817 |
tgaagatgctccaagttacattcttcaatatct |
40196849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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