View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_11 (Length: 321)
Name: NF19067_low_11
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 52251044 - 52250747
Alignment:
| Q |
11 |
cagagagctatgacagggaatttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatcagaatc |
110 |
Q |
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| T |
52251044 |
cagagagctatgacagggaatttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttatacacatcagaatc |
52250945 |
T |
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| Q |
111 |
ttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgca |
210 |
Q |
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| T |
52250944 |
ttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgca |
52250845 |
T |
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| Q |
211 |
gaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatc |
308 |
Q |
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| T |
52250844 |
gaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatc |
52250747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 52262667 - 52262387
Alignment:
| Q |
30 |
atttgaaagattcttgggttgttggaaatcctgggttcccattgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgc |
129 |
Q |
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| T |
52262667 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
52262568 |
T |
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| Q |
130 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
229 |
Q |
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| T |
52262567 |
gtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaa |
52262468 |
T |
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| Q |
230 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatctg |
310 |
Q |
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| T |
52262467 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggatctg |
52262387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 3698867 - 3698971
Alignment:
| Q |
186 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
285 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| | | || ||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
3698867 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttgttgtgttttgcataacatttgtga |
3698966 |
T |
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| Q |
286 |
aatga |
290 |
Q |
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|||| |
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| T |
3698967 |
gatga |
3698971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 3702555 - 3702659
Alignment:
| Q |
186 |
tgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtga |
285 |
Q |
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||||||| |||||||||||||||||||| |||| || |||||| || | || ||||||| || ||| |||||||||||||||||||||| |||||||| |
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| T |
3702555 |
tgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttgtgcttgttgtgttttgcataacatttgtga |
3702654 |
T |
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| Q |
286 |
aatga |
290 |
Q |
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|||| |
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| T |
3702655 |
gatga |
3702659 |
T |
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