View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19067_low_13 (Length: 304)
Name: NF19067_low_13
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 53063935 - 53064204
Alignment:
| Q |
19 |
ggtgggacttgggagtaaagcagttgaagataagcaattttttgacagccatcttgctctgtgttaccgaattgaacatattcttacattgtcgcgtttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53063935 |
ggtgggacttgggagtaaagcagttgaagataagcaattttttgacagccatcttgctctgtgttaccgaattgaacatattcttacattgtcgcgtttg |
53064034 |
T |
|
| Q |
119 |
cctttcttatgttctccccaatcttcataatagatcaacttttcaagttcataagaaatggcctttccttatgaatttctcattttattttattcagaaa |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53064035 |
cgtttcttatgttctccccaatcttcataatagatcaacttttcaagttcataagaaacggcctttccttatgaatttctcattttattttattcagaaa |
53064134 |
T |
|
| Q |
219 |
tttctttccttgtcttgtgtaaagagaggatgaatctttcttatttctatgcataattgcatggttttgc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53064135 |
tttctttccttgtcttgtgtaaagagaggatgaatctttcttatttctatgcataattgcatggttttgc |
53064204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 53339814 - 53339587
Alignment:
| Q |
22 |
gggacttgggagtaaagcagttgaagataagcaattttttgacagccatcttgctctgtgttaccgaattgaacatattcttacatt-gtcgcgtttgcc |
120 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
53339814 |
gggacttgggagtaaagcagctgaagagaagcaattatttgt-agccatcttgctccgtgttaccgaattgaacaggttcttacatttgtctcgttt--- |
53339719 |
T |
|
| Q |
121 |
tttcttatgttctccccaatcttcataatagatcaacttttcaagttcataagaaatggcctttccttatgaatttctcattttattttattcagaaatt |
220 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
53339718 |
---cttgtgttctccccaatcttcataatagatcaacttttcaagttcagaagaaatggccttgctttatgaatttctcattttattttgttcagaaatt |
53339622 |
T |
|
| Q |
221 |
tctttccttgtcttgtgtaaagagaggatgaatct |
255 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||| |
|
|
| T |
53339621 |
tctttccttgtcttgtgtaaaaaaaagatgaatct |
53339587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 53332411 - 53332226
Alignment:
| Q |
65 |
agccatcttgctctgtgttaccgaattgaacatattcttacatt-gtcgcgtttgcctttcttatgttctccccaatcttcataatagatcaacttttca |
163 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53332411 |
agccatcttgctccgtgttaccgaattgaacaggttcttacatttgtctcgttt------cttgtgttctccccaatcttcataatagatcaacttttca |
53332318 |
T |
|
| Q |
164 |
agttcataagaaatggcctttccttatgaatttctcattttattttattcagaaatttctttccttgtcttgtgtaaagagaggatgaatct |
255 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
53332317 |
agttcagaagaaatggccttgctttatgaatttctcattttattttgttcagaaatttctttccttgtcttgtgtaaaaaaaagatgaatct |
53332226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 53336095 - 53335910
Alignment:
| Q |
65 |
agccatcttgctctgtgttaccgaattgaacatattcttacatt-gtcgcgtttgcctttcttatgttctccccaatcttcataatagatcaacttttca |
163 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53336095 |
agccatcttgctccgtgttaccgaattgaacaggttcttacatttgtctcgttt------cttgtgttctccccaatcttcataatagatcaacttttca |
53336002 |
T |
|
| Q |
164 |
agttcataagaaatggcctttccttatgaatttctcattttattttattcagaaatttctttccttgtcttgtgtaaagagaggatgaatct |
255 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
53336001 |
agttcagaagaaatggccttgctttatgaatttctcattttattttgttcagaaatttctttccttgtcttgtgtaaaaaaaagatgaatct |
53335910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 54002751 - 54002491
Alignment:
| Q |
19 |
ggtgggacttgggagtaaagcagttgaagataagcaattttttgacagccatcttgctctgtgttaccgaattgaacatattcttacattgtcgcgtttg |
118 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||| || |||| |||| ||||| |||||||||| || | ||| |
|
|
| T |
54002751 |
ggtgggacccgggagtaaagcagctgaagagaagcagttttttgacagccatcttgctccgttttacagaatcgaacaggttcttacattttcccattt- |
54002653 |
T |
|
| Q |
119 |
cctttcttatgttctccccaatcttcataatagatcaacttttcaagttcataagaaatggcctttccttatgaatttctcattttattttattcagaaa |
218 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||||||| |||||||| ||| ||||| ||||||| ||||||||||||||||||||||| | |
|
|
| T |
54002652 |
-----cttgtgttctccccaatccccataataatccaacttttcatgttcataataaacagccttgccttatgcatttctcattttattttattcagtat |
54002558 |
T |
|
| Q |
219 |
tttctttccttgtcttgtgtaaagagaggatgaatctttcttatttctatgcataattgcatggtttt |
286 |
Q |
| |
|
|||||||||| ||| |||||||| | |||||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
54002557 |
tttctttcctcgtcatgtgtaaa-aaaggatgcatcttttttatttctttgcataattgcatggtttt |
54002491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 286
Target Start/End: Original strand, 53061777 - 53061936
Alignment:
| Q |
122 |
ttcttatgttctccccaatcttcataatagatcaacttttcaagttcataagaaatggcctttccttatgaatttctcattttattttattcagaaattt |
221 |
Q |
| |
|
||||| |||| |||||||||||| ||| |||| ||||||||| |||||||| ||| | |||| ||||||||||||| ||||||||| | | ||||| |
|
|
| T |
53061777 |
ttcttgtgttatccccaatcttcgtaaaagataaacttttcatgttcataataaacgaccttgccttatgaatttcgcattttattct-----gcaattt |
53061871 |
T |
|
| Q |
222 |
ctttccttgtcttgtgtaaagagaggatgaatctttcttatttctatgcataattgcatggtttt |
286 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53061872 |
ctttccttgtctagtgtaaaaaagggatgaatctttcttatttctatgcataattacatggtttt |
53061936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University