View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_16 (Length: 292)
Name: NF19067_low_16
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 46957196 - 46957468
Alignment:
| Q |
7 |
atgcggatgatctcgccattaaaatgtatttggtggagtgtgaatttcagatagaaatgaagtgtctttctagactaatgccattatctgatgtttaaat |
106 |
Q |
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| T |
46957196 |
atgcggatgatctcgccattaaaatgtatttggtggagtgtgaatttcagatagaaatgaagtgtctttctagactaatgccattatctgatgtttaaat |
46957295 |
T |
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| Q |
107 |
taatttgaagttatcaagcctttggtggagtgtcatacttgagatcagctaaagacattgcgtataatgttgccttgttcattgccaagaaaggaagcta |
206 |
Q |
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| T |
46957296 |
taatttgaagttatcaagcctttggtggagtgtcatacttgagatcagctaaagacattgcgtataatgttcccttgttcattgccaagaaaggaagcta |
46957395 |
T |
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| Q |
207 |
tgttaattactactccacatggtatcatcaccaactatattctataatctgttcctcttttctctcttacttc |
279 |
Q |
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| T |
46957396 |
tgttaattactactccacatggtatcatcactatctatattctataatctgttcctcttttctctcttacttc |
46957468 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 40100891 - 40100985
Alignment:
| Q |
121 |
caagcctttggtggagtgtcatacttgagatcagctaaagacattgcgtataatgttgccttgttcattgccaagaaaggaagctatgttaatta |
215 |
Q |
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| T |
40100891 |
caagcttttggtggagcaccatacatgagatcagcttcagacattgcctataatgttgccttgttcatagcaaagaaaggaagttatgtcaatta |
40100985 |
T |
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