View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_low_18 (Length: 285)

Name: NF19067_low_18
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_low_18
NF19067_low_18
[»] chr5 (2 HSPs)
chr5 (179-270)||(589825-589916)
chr5 (17-179)||(40270927-40271089)
[»] chr1 (3 HSPs)
chr1 (17-180)||(30717982-30718145)
chr1 (82-180)||(10310640-10310738)
chr1 (17-61)||(10310760-10310804)
[»] chr3 (1 HSPs)
chr3 (19-178)||(5373735-5373893)
[»] chr7 (2 HSPs)
chr7 (82-178)||(27455903-27456000)
chr7 (17-61)||(27456021-27456066)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 589825 - 589916
Alignment:
Q  179 ttaagtaattcagatatgtaaaattctttgaaattatgtctcctgcgacggatctagaaatataatataacatttcatttttaaaagcataa 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  589825 ttaagtaattcagatatgtaaaattctttgaaattatgtctcctgcgacggatctagaaatataatataacatttcgtttttaaaagcataa 589916  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 40271089 - 40270927
Alignment:
Q  17 agatttctcacgaattcctcaagaatcaaaaaatgcagttataacnnnnnnnnnnnnnnnnnnnngaggtcccacttaccaaacatgtgggttagcataa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||    
T  40271089 agatttctcacgaattcctcaagaatcaaaaaatgcagttataacaaaaaaataaaacaaaaaaagaggtcccacttaccaaacatgtgggttagcataa 40270990  T
Q  117 taaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcct 179  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||||    
T  40270989 taaaagaaatagcggttcttgaatttttgttaaaaaaaatttcgctgaatacaacattttcct 40270927  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 30718145 - 30717982
Alignment:
Q  17 agatttctcacgaattcctcaagaatcaaaaaatgcagttataacnnnnnnnnnnnnnnnnnnnngaggtcccacttaccaaacatgtgggttagcataa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||                    ||| |||||||||||||||||||||||||||||||    
T  30718145 agatttctcacgaattcctcaagaataaaaaaatgcagttataacaaaaaaataaaacaaaaaaagagatcccacttaccaaacatgtgggttagcataa 30718046  T
Q  117 taaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcctt 180  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  30718045 taaaagaaatagcggttcttgaatttttcttaaaaaaaatttcgctgaatacagcattttcctt 30717982  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 10310738 - 10310640
Alignment:
Q  82 gaggtcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcctt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  10310738 gaggtcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaaaaattcgctgaatacagcattttcctt 10310640  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 10310804 - 10310760
Alignment:
Q  17 agatttctcacgaattcctcaagaatcaaaaaatgcagttataac 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10310804 agatttctcacgaattcctcaagaatcaaaaaatgcagttataac 10310760  T

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Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 5373893 - 5373735
Alignment:
Q  19 atttctcacgaattcctcaagaatcaaaaaatgcagttataacnnnnnnnnnnnnnnnnnnnngaggtcccacttaccaaacatgtgggttagcataata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||    
T  5373893 atttctcacgaattcctcaagaatcaaaaaatgcagttataacaaaaaaataaaacaaaaaaagaggtcccacttaccaaacatgtgggttagcataata 5373794  T
Q  119 aaagaaatagcggttcttgaatttttcttaaaaaatttttcgctgaatacagcattttcc 178  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  5373793 aaagaaatagcggttctttaatttttcttaaaata-ttttcgctgaatacagcattttcc 5373735  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 27456000 - 27455903
Alignment:
Q  82 gaggtcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaa-aaatttttcgctgaatacagcattttcc 178  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||    
T  27456000 gaggtcccacttaccaaacatatgggttagcataataaaagaaatagcggttcttgaatttttcttaaattttttttttgctgaatacagcattttcc 27455903  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 27456066 - 27456021
Alignment:
Q  17 agatttctcacgaattcctcaagaat-caaaaaatgcagttataac 61  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  27456066 agatttctcacgaattcctcaagaataaaaaaaatgcagttataac 27456021  T

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