View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_low_19 (Length: 280)

Name: NF19067_low_19
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_low_19
NF19067_low_19
[»] chr8 (5 HSPs)
chr8 (65-265)||(36991638-36991837)
chr8 (1-66)||(36991860-36991925)
chr8 (82-191)||(36996871-36996968)
chr8 (147-192)||(34592492-34592537)
chr8 (1-45)||(37001598-37001642)
[»] chr4 (9 HSPs)
chr4 (65-191)||(13683408-13683534)
chr4 (65-191)||(22187918-22188044)
chr4 (80-191)||(26646318-26646428)
chr4 (65-180)||(26646620-26646734)
chr4 (99-191)||(33078057-33078149)
chr4 (80-191)||(13689750-13689846)
chr4 (1-66)||(22188066-22188135)
chr4 (1-45)||(13682932-13682976)
chr4 (1-45)||(26646776-26646820)
[»] chr7 (2 HSPs)
chr7 (71-129)||(8596620-8596678)
chr7 (13-66)||(8596707-8596760)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 65 - 265
Target Start/End: Complemental strand, 36991837 - 36991638
Alignment:
Q  65 ttgtttaattttatgaattagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatat 164  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36991837 ttgtttaattttatgaattacttaataataaaaagtgtgatgcaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatat 36991738  T
Q  165 tctaattatttatttaatggatgcaggcnnnnnnnttaaagtgaactttactcatagtgagctccttcaagggatccgtctgtatggatggaagtgaaga 264  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  36991737 tctaattatttatttaatggatgcaggc-aaaaaattaaagtgaactttactcatagtgaactccttcaagggatccgtctgtatggatgggagagaaga 36991639  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36991925 - 36991860
Alignment:
Q  1 atttgttcttgactatctattcaggtaccatatatgatttatttaatgaaatgggatcttgtattt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36991925 atttgttcttgactatctattcaggtaccatatatgatttatttaatgaaatgggatcttgtattt 36991860  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 36996968 - 36996871
Alignment:
Q  82 ttagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatattctaattatttatttaa 181  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||            |||||||||||||||||||||||||||||||    
T  36996968 ttagttaataataaaaagtgtgatacaatagtgtcggtaggctttttgcttgatatc------------caggctgatcatattctaattatttatttaa 36996881  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 34592492 - 34592537
Alignment:
Q  147 tgtgcaggctgatcatattctaattatttatttaatggatgcaggc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34592492 tgtgcaggctgatcatattctaattatttatttaatggatgcaggc 34592537  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37001642 - 37001598
Alignment:
Q  1 atttgttcttgactatctattcaggtaccatatatgatttattta 45  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||    
T  37001642 atttgttcttgactatctattcaggtaccatttatgatatattta 37001598  T

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Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 13683408 - 13683534
Alignment:
Q  65 ttgtttaattttatgaattagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatat 164  Q
    ||||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13683408 ttgtttaatttaaaaaattagttaataataaaaagtgtgatacaatagtgttgctaggcttttggcttgatacccagtagactgtgcaggctgatcatat 13683507  T
Q  165 tctaattatttatttaatggatgcagg 191  Q
    |||||||||||||||||||||||||||    
T  13683508 tctaattatttatttaatggatgcagg 13683534  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 22188044 - 22187918
Alignment:
Q  65 ttgtttaattttatgaattagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatat 164  Q
    ||||| |||||||  || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22188044 ttgttcaattttaaaaactagttaataataaaaagtgtgatacaatagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatat 22187945  T
Q  165 tctaattatttatttaatggatgcagg 191  Q
    ||||||||| |||||||||||||||||    
T  22187944 tctaattatctatttaatggatgcagg 22187918  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 26646428 - 26646318
Alignment:
Q  80 aattagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatattctaattatttattt 179  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  26646428 aattagttaataataaaa-gtgtgatacattagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttattt 26646330  T
Q  180 aatggatgcagg 191  Q
    ||||||||||||    
T  26646329 aatggatgcagg 26646318  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 26646734 - 26646620
Alignment:
Q  65 ttgtttaattttatgaattagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatat 164  Q
    ||||||||||| |  |||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  26646734 ttgtttaatttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgttaggcttttggcttgatatccagtagaccgtgcaggctgatcatat 26646636  T
Q  165 tctaattatttattta 180  Q
    ||||||||||||||||    
T  26646635 tctaattatttattta 26646620  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 33078057 - 33078149
Alignment:
Q  99 gtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatattctaattatttatttaatggatgcagg 191  Q
    ||||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33078057 gtgtgatgcaatagtgttgctaggcttttggcttgttatctagtagactgtgcaggctgatcatattctaattatttatttaatggatgcagg 33078149  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 13689750 - 13689846
Alignment:
Q  80 aattagttaataataaaaagtgtgatacaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatattctaattatttattt 179  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||               || |||||||||||||||||||||||||||||||||    
T  13689750 aattagttaataataaaaagtgtgatacaatagtgttgctaggcttttg---------------gaatgtgcaggctgatcatattctaattatttattt 13689834  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22188135 - 22188066
Alignment:
Q  1 atttgttcttgactatctattcaggtaccat----atatgatttatttaatgaaatgggatcttgtattt 66  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||    
T  22188135 atttgttcttgactatctattcaggtaccatatatatatgatttatttaatgacatgggatcttgtattt 22188066  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13682932 - 13682976
Alignment:
Q  1 atttgttcttgactatctattcaggtaccatatatgatttattta 45  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  13682932 atttgttcttgactatctattcaggtatcatatatgatttattta 13682976  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26646820 - 26646776
Alignment:
Q  1 atttgttcttgactatctattcaggtaccatatatgatttattta 45  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  26646820 atttgttcttgactatctattcaggtaccatatatgacttattta 26646776  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 8596678 - 8596620
Alignment:
Q  71 aattttatgaattagttaataataaaaagtgtgatacaacagtgttgctaggcttttgg 129  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8596678 aattttaaaaattagtttataataaaaagtgtgatacaacagtgttgctaggcttttgg 8596620  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 8596760 - 8596707
Alignment:
Q  13 ctatctattcaggtaccatatatgatttatttaatgaaatgggatcttgtattt 66  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  8596760 ctatctattcaggtaccatatatgatttatttaatgaaacaggatcttgtattt 8596707  T

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