View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_20 (Length: 265)
Name: NF19067_low_20
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 38859239 - 38859479
Alignment:
| Q |
6 |
agtgagatgaacttgaacagggtcttccgttactataccagtataatccatataacagttgtcaattctagttaaagaatttcctgccaatttcactaag |
105 |
Q |
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| T |
38859239 |
agtgacatgaacttgaacagggtcttccgttactataccagtataatccatataacagttgtcaattctagttaaagaatttcctgccaatttcactaag |
38859338 |
T |
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| Q |
106 |
atacctatacctccaaatcctgctgctttgttataacaatgcacccctgatagaatgttagcctgacctcttagcacaataccagtggctgccgagaaaa |
205 |
Q |
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| T |
38859339 |
atacctatacctccaaatcctgctgctttgttataacaatgcacccctgatagaatgttagcctgacctcttagcacaataccagtggctgccgagaaaa |
38859438 |
T |
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| Q |
206 |
tcgcgacatcagtgattgcattgtcattactagcaagatca |
246 |
Q |
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| T |
38859439 |
tcgcgacatcagtgattgcattgtcattactagcaagatca |
38859479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 246
Target Start/End: Complemental strand, 15180654 - 15180414
Alignment:
| Q |
6 |
agtgagatgaacttgaacagggtcttccgttactataccagtataatccatataacagttgtcaattctagttaaagaatttcctgccaatttcactaag |
105 |
Q |
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| T |
15180654 |
agtgacatgaacttgaacaggatcttccatgactatactattataatccatgtaacaattatcaattcttgtttgtgaattccctgctaacttcaacaaa |
15180555 |
T |
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| Q |
106 |
atacctatacctccaaatcctgctgctttgttataacaatgcacccctgatagaatgttagcctgacctcttagcacaataccagtggctgccgagaaaa |
205 |
Q |
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| T |
15180554 |
attccaattccaccaaaacctgttgctttgttataacaatgcacacctgtgattatgttagcttgtcccctaacaacaattccaatggctgctgagaaaa |
15180455 |
T |
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| Q |
206 |
tcgcgacatcagtgattgcattgtcattactagcaagatca |
246 |
Q |
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| T |
15180454 |
ttgcgacatcggtgatagcattgtcattgctagcaagatca |
15180414 |
T |
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