View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_22 (Length: 255)
Name: NF19067_low_22
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 49952071 - 49952325
Alignment:
| Q |
1 |
tgtcccttccatatcttgatgatgatccttcccaccactacttcctggaataaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcacca |
100 |
Q |
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| T |
49952071 |
tgtcccttccatatcttgatgatgatccttcccaccactacttcctggaataaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcacca |
49952170 |
T |
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| Q |
101 |
ccacctgcacctgcaacatagttcatgttgtgatattgctggtggtgactgctactcatcacgtgacccacatgatattcattcattggatgctgaggaa |
200 |
Q |
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| T |
49952171 |
ccacctgcacctgcaacatagttcatgttgtgatattgctggtggtgactgctactcatcacgtgacccacatgatattcattcattggatgctgaggaa |
49952270 |
T |
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| Q |
201 |
tcaaatgtgttgggaaagacactgggcgtgtaggtgaagagtacagatatggttg |
255 |
Q |
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| T |
49952271 |
tcaaatgtgttgggaaagacactgggcgtgtaggtgaagagtacagatatggttg |
49952325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 49978932 - 49978876
Alignment:
| Q |
52 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
108 |
Q |
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| T |
49978932 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
49978876 |
T |
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