View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_low_24 (Length: 250)

Name: NF19067_low_24
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_low_24
NF19067_low_24
[»] chr7 (7 HSPs)
chr7 (56-236)||(24472864-24473044)
chr7 (66-223)||(8020360-8020517)
chr7 (66-223)||(29214344-29214501)
chr7 (56-157)||(31047546-31047647)
chr7 (66-223)||(25712892-25713049)
chr7 (69-151)||(38111362-38111444)
chr7 (81-129)||(45753388-45753436)
[»] chr3 (5 HSPs)
chr3 (56-236)||(54812851-54813031)
chr3 (56-236)||(46427972-46428152)
chr3 (56-236)||(42793902-42794082)
chr3 (66-223)||(27156782-27156939)
chr3 (66-223)||(54346161-54346318)
[»] chr8 (2 HSPs)
chr8 (56-232)||(44145135-44145311)
chr8 (66-223)||(26617340-26617497)
[»] chr6 (3 HSPs)
chr6 (56-236)||(1223564-1223744)
chr6 (24-58)||(898092-898126)
chr6 (81-124)||(26207961-26208004)
[»] chr5 (2 HSPs)
chr5 (56-236)||(18882796-18882976)
chr5 (69-151)||(14024272-14024354)
[»] chr2 (4 HSPs)
chr2 (66-223)||(40197002-40197159)
chr2 (66-223)||(7305697-7305854)
chr2 (104-233)||(26381877-26382006)
chr2 (63-149)||(42161748-42161834)
[»] chr1 (6 HSPs)
chr1 (156-236)||(22065805-22065885)
chr1 (66-223)||(5308068-5308225)
chr1 (66-223)||(23949124-23949281)
chr1 (66-223)||(23085527-23085684)
chr1 (66-223)||(23722713-23722870)
chr1 (103-223)||(50953184-50953304)
[»] chr4 (3 HSPs)
chr4 (66-223)||(36895032-36895189)
chr4 (66-223)||(34390421-34390578)
chr4 (69-151)||(1368771-1368853)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 24472864 - 24473044
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24472864 tgtttggatttctcctacttgcccatgttgtgggaatgatgatgaaactgtccttcacgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 24472963  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24472964 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 24473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 8020517 - 8020360
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    ||||||| |||||| | |||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| |    
T  8020517 tctcctaattgcccgtattgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat 8020418  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| ||  |||| ||||||||||| | |||||||||    
T  8020417 atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct 8020360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 29214501 - 29214344
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||  |||||||| ||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||| || | |  |||||||    
T  29214501 tctcctacttgcctgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgtgattgcatccacgctactcaggtatggatttacaccgttcctt 29214402  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
    |  | ||||||||||| |  ||||| ||  |||  ||||||||||| | |||||||||    
T  29214401 ctaattttataactaattgtttttctttcaattacagggattggttcttcaataacct 29214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 31047546 - 31047647
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    |||||||||||| || ||||  | ||||||||| ||||| ||||||| ||| ||||||||||| | | |||||||||||| ||||| |||||  ||||||    
T  31047546 tgttgggatttcacccacttatcaatgttgtggtaatgatgatgaaattgttcttcatgtgctccataattgcattcatgtaactcgggtataacttcat 31047645  T
Q  156 at 157  Q
    ||    
T  31047646 at 31047647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 25712892 - 25713049
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||| |||  ||||| | ||||| |||||||| || ||| ||||| ||||||||| ||| ||  |||||||| |||||||| | || |||||||    
T  25712892 tctcctactttcccgagttgtcgaaatgaagatgaaaccgttcttaatgtgattcgtgattccatccacacaactcagatatggctttacatcgttcctt 25712991  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||| | | || ||||| |  ||||| ||||||||||| | |||||||||    
T  25712992 atgattttataaattatttattttcttccgattgcagggattggttcttcaataacct 25713049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 38111444 - 38111362
Alignment:
Q  69 cctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggct 151  Q
    |||||||| || ||||||| ||  ||||||||||| ||| ||||||| |||||||||||  | || || ||||||||||||||    
T  38111444 cctacttgtccttgttgtgcgagagaggatgaaacagtcattcatgtccttcgtgattgtgtgcacgctactcaggtatggct 38111362  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 45753436 - 45753388
Alignment:
Q  81 tgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgca 129  Q
    |||||||| ||||  || |||||||| ||||||||||||||||||||||    
T  45753436 tgttgtggaaatgccgacgaaactgttcttcatgtgcttcgtgattgca 45753388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 54813031 - 54812851
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54813031 tgttgggatttctcctacttgcccatgttgtgggaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 54812932  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812931 attgttccttccaacgttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 54812851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 46427972 - 46428152
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46427972 tgttgggatttctccgacttgcccatgttgtgggaatgatgattaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 46428071  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46428072 attgttccttccgactttataactaacttcttttcctttgattgtggggattggttttccaataaccttaagagaaaaatg 46428152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 42793902 - 42794082
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    |||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42793902 tgttgggatttcccttgcttgcccatgttgtgggaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 42794001  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42794002 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttctccaataaccttaagagaaaaatg 42794082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 27156939 - 27156782
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||||  | || || |||||||||||| | || ||||| |    
T  27156939 tctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatctacgctacccaggtatggctttacatcgttccat 27156840  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| |||||||| ||||||||||| | |||||||||    
T  27156839 atgattttataactaatttcttttcttttgattgcagggattggttcttcaataacct 27156782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 54346161 - 54346318
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    ||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| |    
T  54346161 tctcctaattgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat 54346260  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| ||  |||| ||||||||||| | |||||||||    
T  54346261 atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct 54346318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 44145135 - 44145311
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145135 tgttgggatttctccaacttgcccatgttgtgggaatgatgatgaaattgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 44145234  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145235 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaa 44145311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 26617497 - 26617340
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||| |||||||| ||||| ||||||||| | |||||||||||||| | ||||||  |||| ||||||||||||||| | || ||||| |    
T  26617497 tctcctacttgcccgtgttgtggaaatgaagatgaaactattcttcatgtgcttcgcggttgcatctatgctactcaggtatggctttacatcgttccat 26617398  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| || ||||| | ||||||||| | |||||||||    
T  26617397 atgattttataactaatttcttttctttcgattgcatggattggttcttcaataacct 26617340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 1223744 - 1223564
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1223744 tgttgggatttctcctacttgcccatgttgtggaaatgatgatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcatgtatggcttcat 1223645  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1223644 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaatgaccttaagagaaaaatg 1223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 898126 - 898092
Alignment:
Q  24 tcaactttgacatcaaagtaaaaagaatcagttgt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  898126 tcaactttgacatcaaagtaaaaagaatcagttgt 898092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 26207961 - 26208004
Alignment:
Q  81 tgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtga 124  Q
    |||||||||||||  ||||| |||||||||||||||||||||||    
T  26207961 tgttgtgggaatgcagatgagactgtccttcatgtgcttcgtga 26208004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 56 - 236
Target Start/End: Original strand, 18882796 - 18882976
Alignment:
Q  56 tgttgggatttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcat 155  Q
    ||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  18882796 tgttgggatttttcctacttgcccatgttgtgggaataatgatgaaaatgtccttcatgtgctttgtgactgtattcatgcaactcaggtatggcttcat 18882895  T
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    |||||||| || || |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  18882896 attgttccctctgattttataactaacttcttttcctttgactgtagggattggtttttcaataaccttaagaggaaaatg 18882976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 14024272 - 14024354
Alignment:
Q  69 cctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggct 151  Q
    |||||||| || ||||||| ||  ||||||||||| ||| ||||||| |||||||||||  | || || ||||||||||||||    
T  14024272 cctacttgtccttgttgtgcgagagaggatgaaacagtcattcatgtccttcgtgattgtgtgcacgctactcaggtatggct 14024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 40197159 - 40197002
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||| |||||||| ||||| ||||||| ||| |||| ||||||| |||||||||| |||||||||| |||||||||| | ||  || |||    
T  40197159 tctcctacttgcccgtgttgtggaaatgaagatgaaattgttcttcgtgtgctttgtgattgcatccatgcaactcgggtatggctttacatcctttctt 40197060  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
    | || ||||||||||| |||||||| |||||||| ||||||||||| | |||||||||    
T  40197059 ctgattttataactaatttcttttcttttgattgcagggattggttcttcaataacct 40197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 7305854 - 7305697
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||  | || ||||||||||||||| | || ||||| |    
T  7305854 tctcctacttgcccgtgttgtggaaatgaagatgaaactgttcttcacgtgcttcgcgattgcatctacgctactcaggtatggctttacatcgttccat 7305755  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| || ||||| ||||||||||| | |||||||||    
T  7305754 atgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct 7305697  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 233
Target Start/End: Complemental strand, 26382006 - 26381877
Alignment:
Q  104 tgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtagg 203  Q
    |||| |||| ||| ||| ||| |||||||| ||||| || |||||| |||||||||||||||| || ||||||| ||| || ||||| |||||||| |||    
T  26382006 tgtcattcacgtgattcatgactgcattcacgcaacccaagtatggtttcatattgttccttctgattttataaataatttattttcttttgattgcagg 26381907  T
Q  204 gattggttttccaataaccttaagagaaaa 233  Q
    |||||  ||| ||||||||| || ||||||    
T  26381906 gattgaattttcaataacctcaatagaaaa 26381877  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 42161834 - 42161748
Alignment:
Q  63 atttctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatgg 149  Q
    ||||| |||||||| || |||||||||||||   |||| || ||  |||||||||||||||||||||  |||||| |||||||||||    
T  42161834 atttcgcctacttgtccttgttgtgggaatgcaaatgagaccgttattcatgtgcttcgtgattgcaggcatgcatctcaggtatgg 42161748  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 22065885 - 22065805
Alignment:
Q  156 attgttccttccgactttataactaacttcttttcctttgattgtagggattggttttccaataaccttaagagaaaaatg 236  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22065885 attgttcctttcgactttataactaacttcttttcctttgattgcagggattggttttccaataaccttaagagaaaaatg 22065805  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 5308068 - 5308225
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| |    
T  5308068 tctcctacttgcccgtgttgtggaaatgaagatgaaaatgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat 5308167  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| ||  |||| ||||||||||| | |||||||||    
T  5308168 atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct 5308225  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 23949124 - 23949281
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    ||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||| |||||||| || || || |||||||||||| | || ||||| |    
T  23949124 tctcctaattgcccgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatccacgctacccaggtatggctttacatcgttccat 23949223  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| ||  |||| ||||||||||| | |||||||||    
T  23949224 atgattttataactaatttcttttctttcaattgcagggattggttcttcaataacct 23949281  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 23085684 - 23085527
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||| | |||| ||| ||||| ||||||| ||| |||||||||||||| ||||||||  | || ||||||||||||||| | |||||||| |    
T  23085684 tctcctacttgcacgtgttatggaaatgaagatgaaattgttcttcatgtgcttcgcgattgcatctacgctactcaggtatggctttacattgttccat 23085585  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| || ||||| | ||||||||| | |||||||||    
T  23085584 atgattttataactaatttcttttctttcgattgcaaggattggttcttcaataacct 23085527  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 23722713 - 23722870
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    ||||||||||| || |||||||| ||||| ||||||| ||| |||||||||||||| |||||||| || || || || ||||||||| | || ||||| |    
T  23722713 tctcctacttgtccgtgttgtggaaatgaagatgaaattgttcttcatgtgcttcgcgattgcatccacgctacccaagtatggctttacatcgttccat 23722812  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| || ||||| ||||||||||| | |||||||||    
T  23722813 atgattttataactaatttcttttctttcgattgcagggattggttcttcaataacct 23722870  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 50953304 - 50953184
Alignment:
Q  103 ctgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttccttccgactttataactaacttcttttcctttgattgtag 202  Q
    |||| |||||||||||| ||||||||||| ||||  | || ||||||||| | || ||||| |  || ||||||||||| |||||||| || ||||| ||    
T  50953304 ctgttcttcatgtgctttgtgattgcatttatgctgcccatgtatggctttacatcgttccatatgattttataactaatttcttttctttcgattgcag 50953205  T
Q  203 ggattggttttccaataacct 223  Q
    ||||||||| | |||||||||    
T  50953204 ggattggttcttcaataacct 50953184  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 36895189 - 36895032
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||| |||||||| ||||| ||||||| |||  ||||||||||||| ||||||||  | || ||||||||||||||| | || ||||| |    
T  36895189 tctcctacttgcccgtgttgtggaaatgaagatgaaattgtttttcatgtgcttcgcgattgcatctacgctactcaggtatggctttacatcgttccat 36895090  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||| ||||||| |||||||| || ||||| ||||||||||| | |||||||||    
T  36895089 atgattttgtaactaatttcttttctttcgattgcagggattggttcttcaataacct 36895032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 34390578 - 34390421
Alignment:
Q  66 tctcctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggcttcatattgttcctt 165  Q
    |||||||||||||  |||||||| ||||| ||||||||||| |||||||||||||| ||||||||  | || || || ||||||||| | || ||||| |    
T  34390578 tctcctacttgcctgtgttgtggaaatgaagatgaaactgttcttcatgtgcttcgcgattgcatctacgctacccatgtatggctttacatcgttccat 34390479  T
Q  166 ccgactttataactaacttcttttcctttgattgtagggattggttttccaataacct 223  Q
      || ||||||||||| |||||||| || ||||| | ||||||||| | |||||||||    
T  34390478 atgattttataactaatttcttttctttcgattgcaaggattggttcttcaataacct 34390421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 1368771 - 1368853
Alignment:
Q  69 cctacttgcccatgttgtgggaatgaggatgaaactgtccttcatgtgcttcgtgattgcattcatgcaactcaggtatggct 151  Q
    |||||||| || ||||||| ||  ||||||||||| ||| ||||||| |||||||||||  | || || ||||||||||||||    
T  1368771 cctacttgtccttgttgtgcgagagaggatgaaacagtcattcatgtccttcgtgattgtgtgcacgctactcaggtatggct 1368853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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