View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_27 (Length: 240)
Name: NF19067_low_27
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_27 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 42313369 - 42313133
Alignment:
| Q |
4 |
aggtgattgattgtatttccattcttagttttaaattaaaatttatacatgtctccaaatttctaggccactatctgaattgtagcatgtgttgtttgga |
103 |
Q |
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| T |
42313369 |
aggtgattgattgtatttccattcgtagttttaaattaaaatttatacatgtctccaaatttctaggccactatctgaattgtagcatgtgttgtttgga |
42313270 |
T |
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| Q |
104 |
attggattatgctcttaacatgaaatgtctttgatctcttgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgt |
203 |
Q |
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| T |
42313269 |
attggattatgctcttaacatgaaatgtctttgatctcttgcagagcttacagaagatgctcacttctggtattcattcatgggctcctcgacttcctgt |
42313170 |
T |
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| Q |
204 |
caagaggattctggttgacttttcctcgcctaatata |
240 |
Q |
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| T |
42313169 |
caagaggattctggttgacttttcctcgcctaatata |
42313133 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 47977846 - 47977749
Alignment:
| Q |
143 |
tgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatata |
240 |
Q |
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| T |
47977846 |
tgcagagcttacagaagatgcttaccgatggtattgattcatgggcacctcgacttccaatcaagagggttatggttgacttttcctcaccgaatata |
47977749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 51565006 - 51565103
Alignment:
| Q |
143 |
tgcagagcttacagaagatgctcacttgtggtattcattcatgggctcctcgacttcctgtcaagaggattctggttgacttttcctcgcctaatata |
240 |
Q |
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| T |
51565006 |
tgcagagcttacagaggatgcttaccgatggtattgattcatgggcacctcgacttccaatcaagagggttatggttgacttttcctcacccaatata |
51565103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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