View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_29 (Length: 223)
Name: NF19067_low_29
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 41705194 - 41705009
Alignment:
| Q |
20 |
cctatgttgtactaagaatcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaag |
119 |
Q |
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| T |
41705194 |
cctatgttgtactaagagtcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaag |
41705095 |
T |
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| Q |
120 |
caatggtatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctct |
205 |
Q |
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| T |
41705094 |
caatggtatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctct |
41705009 |
T |
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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 1453360 - 1453265
Alignment:
| Q |
45 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
140 |
Q |
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| T |
1453360 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 1465052 - 1464957
Alignment:
| Q |
45 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
140 |
Q |
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| T |
1465052 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
77 |
cttggttacccggttcatgtgtcacacaagacatgcc |
113 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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