View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19067_low_30 (Length: 201)

Name: NF19067_low_30
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19067_low_30
NF19067_low_30
[»] chr2 (2 HSPs)
chr2 (15-124)||(35127557-35127666)
chr2 (15-124)||(35149560-35149670)
[»] chr8 (1 HSPs)
chr8 (131-201)||(12700716-12700786)
[»] scaffold0065 (1 HSPs)
scaffold0065 (129-201)||(66803-66875)
[»] chr7 (4 HSPs)
chr7 (124-192)||(10015276-10015344)
chr7 (129-201)||(37548319-37548390)
chr7 (131-201)||(36628963-36629033)
chr7 (129-161)||(30081987-30082019)
[»] chr4 (1 HSPs)
chr4 (124-192)||(56366418-56366486)
[»] chr3 (2 HSPs)
chr3 (129-201)||(33444039-33444110)
chr3 (129-201)||(9467006-9467077)
[»] chr5 (2 HSPs)
chr5 (130-201)||(32699243-32699314)
chr5 (129-201)||(43323253-43323324)
[»] chr6 (1 HSPs)
chr6 (124-201)||(4090315-4090392)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 35127666 - 35127557
Alignment:
Q  15 gcaacaatcctcaaagactctttcaacaccataagcaaatcacaatcactcttgaaggcttttcgaaacgtacttttcctttcgtcagtacataggtgta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35127666 gcaacaatcctcaaagactctttcaacaccataagcaaatcacaatcactcttgaaggcttttcgaaacgtacttttcctttcgtcagtacataggtgta 35127567  T
Q  115 gcaccttaag 124  Q
    ||||||||||    
T  35127566 gcaccttaag 35127557  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 35149670 - 35149560
Alignment:
Q  15 gcaacaatcctcaaagactctttcaacaccataagcaaat-cacaatcactcttgaaggcttttcgaaacgtacttttcctttcgtcagtacataggtgt 113  Q
    ||||| ||| |||||||||| | ||||||||||| ||||  ||| ||||||||| | || |||||| ||| |||||||||||| |||| |||||||||||    
T  35149670 gcaaccatcttcaaagactcctccaacaccataaacaaaaacacgatcactcttaagggattttcgtaacatacttttccttttgtcaatacataggtgt 35149571  T
Q  114 agcaccttaag 124  Q
    ||| |||||||    
T  35149570 agcgccttaag 35149560  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 12700786 - 12700716
Alignment:
Q  131 cgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||    
T  12700786 cgttcctagcattttaggagccttaggcataaatgaaaaaagggccctttacataattcttttagctcttt 12700716  T

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Target: scaffold0065 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 66875 - 66803
Alignment:
Q  129 gccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||||| |||||||||||| | | |||| |  |||||||||||||||||||||||||||    
T  66875 gccgttcctagcattttaggggccttaggcatagaataaaaaagtgccctttacataattcttttagctcttt 66803  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 10015276 - 10015344
Alignment:
Q  124 gcagagccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttt 192  Q
    |||| |||||||||| ||||||||| |||||||||||| | |||||| |||||||||||||||||||||    
T  10015276 gcagggccgttcctaacattttaggggccttaggcatagaatgaaaaaggaccctttacataattcttt 10015344  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 37548319 - 37548390
Alignment:
Q  129 gccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||||| |||||||||||| | |||||| || |||  ||||||||||||||||||||||    
T  37548319 gccgttcctagcattttaggggccttaggcatagaatgaaaaagggccc-ctacataattcttttagctcttt 37548390  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 36629033 - 36628963
Alignment:
Q  131 cgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||| |||||||| ||| | |||| | || ||| |||||||||||||||||||||||    
T  36629033 cgttcctagcattttaggggccttaggtatagaatgaagaagggccccttacataattcttttagctcttt 36628963  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 30081987 - 30082019
Alignment:
Q  129 gccgttcctagcattttaggagccttaggcata 161  Q
    |||||||||||||||||||| ||||||||||||    
T  30081987 gccgttcctagcattttaggggccttaggcata 30082019  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 56366418 - 56366486
Alignment:
Q  124 gcagagccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttt 192  Q
    |||| |||||||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||    
T  56366418 gcagggccgttcctagcattttaggggccttaggcatagaatgaaaaatgaccctttacataattcttt 56366486  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 33444110 - 33444039
Alignment:
Q  129 gccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||||| ||||||| |||| | |||||| ||||||  ||||||||||||||||||||||    
T  33444110 gccgttcctagcattttaggggccttagacatagaatgaaaaaggaccc-ctacataattcttttagctcttt 33444039  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 9467006 - 9467077
Alignment:
Q  129 gccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||||| |||||||  ||| | |||||| || |||  ||||||||||||||||||||||    
T  9467006 gccgttcctagcattttaggggccttagatatagaatgaaaaagggccc-ctacataattcttttagctcttt 9467077  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 32699314 - 32699243
Alignment:
Q  130 ccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||| |||||||| |||||||||||| | |||||| ||  |||||||||||||||||||| |||||    
T  32699314 ccgttcctagtattttaggggccttaggcatagaatgaaaaagggtcctttacataattcttttagttcttt 32699243  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 43323253 - 43323324
Alignment:
Q  129 gccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||||||||||||||||||| |||| ||| ||| | |||||| ||||||  ||||||||||||||||||||||    
T  43323253 gccgttcctagcattttaggggcctgaggtatagaatgaaaaaggaccc-ctacataattcttttagctcttt 43323324  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 4090315 - 4090392
Alignment:
Q  124 gcagagccgttcctagcattttaggagccttaggcataaagtgaaaatggaccctttacataattcttttagctcttt 201  Q
    |||| |||||||||||||||||||| | |||||||||| | |||||| || ||| |||||||| | ||||||||||||    
T  4090315 gcagggccgttcctagcattttaggggtcttaggcatagaatgaaaaagggccccttacataaattttttagctcttt 4090392  T

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