View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_7 (Length: 410)
Name: NF19067_low_7
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 3652891 - 3652496
Alignment:
| Q |
1 |
accttctttgcctacattgaatttagaggaagcttttgaaatgtattgtaatggtttagttgggtttggcccattttggaatcacatgttaggttattgg |
100 |
Q |
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| T |
3652891 |
accttctttgcctacattgaatttagaggaagcttttgaaatgtattgtaatggtttagttgggtttggcccattttggaatcacatgttaggttattgg |
3652792 |
T |
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| Q |
101 |
aatgagagcaaagagagaccaaaaaatgttcnnnnnnngaagtatgaggacatgaaagaagatttaaaatttcacttgnnnnnnntggctgagtttttgg |
200 |
Q |
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| T |
3652791 |
aatgagagcaaagagagaccaaaaaatgttctttttttgaagtatgaggacatgaaagaagatttaaaatttcacttgaaaaaaatggctgagtttttgg |
3652692 |
T |
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| Q |
201 |
attgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttggagataaataagac |
300 |
Q |
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| T |
3652691 |
atcgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttggagataaataatac |
3652592 |
T |
|
| Q |
301 |
aggaacatttggaaggagctttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggttgaaaa |
396 |
Q |
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| T |
3652591 |
aggaacatttggaaggaactttgagaataagttcttgtttagaaaaggtgaagttggtgattggagtaattatctttcaccttcaatggttgaaaa |
3652496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 1626544 - 1626447
Alignment:
| Q |
191 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttgagaaaatgaaggggttgga |
288 |
Q |
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| T |
1626544 |
gagtttttgggttgtccttttactcaagaggaagaaagtaatggtgtgattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattgga |
1626447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 1617994 - 1617915
Alignment:
| Q |
191 |
gagtttttggattgtccttttacattggaggaggaaagtgagggtgtgattgaaaatataataaagttgtgtagttttga |
270 |
Q |
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|||||||||| |||||||||||| |||||||||||| | ||||||||||||||||| || || || ||||| ||||| |
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| T |
1617994 |
gagtttttgggttgtccttttactcaagaggaggaaagtaatggtgtgattgaaaatattatcaatttatgtagctttga |
1617915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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