View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19067_low_9 (Length: 376)
Name: NF19067_low_9
Description: NF19067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19067_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 52457526 - 52457867
Alignment:
| Q |
11 |
atgaacggagtctggtggcgaataacccgagagagttgaggagattcgacacatgtttgaagaaaaaggaaccgcagaggagtttgtgttatgttgaaga |
110 |
Q |
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| T |
52457526 |
atgaacggagtctggtggcgaataacccgagagagttgaggagattcgacacatgtttgaagaagaaggaaccgcagaggagtttgtgttatgttgaaga |
52457625 |
T |
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| Q |
111 |
attgagtaaagaggagttcaagcgcacggtagatgatttcattgctaaacataagaggatgatgcaatcggaggaacgagcacggtctcagaaaacagag |
210 |
Q |
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| T |
52457626 |
attgagtaaagaggagttcaagcgcacggtagatgatttcattgctaaacataagaggatgatgcaatcggaggaacgagcacggtctcagaaaacagag |
52457725 |
T |
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| Q |
211 |
tatttggccttgactccatattaggaatttaattttaataaaataaattaattttagagattaggtgatttgatgaggattcatagtctattttatttta |
310 |
Q |
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| T |
52457726 |
tatttggccttgactccatattaggaatttaattttaataaaataaattaattttagagattaggtaatttgatgtggattcatggtctattttatttta |
52457825 |
T |
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| Q |
311 |
ctctttcaatacgtaattctaatatttgatcccattcaatga |
352 |
Q |
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| T |
52457826 |
ctctttcaatacgtaattctaatatttgatcccattcaatga |
52457867 |
T |
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