View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19068_high_2 (Length: 417)
Name: NF19068_high_2
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19068_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 33800281 - 33799900
Alignment:
| Q |
1 |
gatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33800281 |
gatgagaatgatgatagggttcattgtgctataaatgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
33800182 |
T |
|
| Q |
101 |
tgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaacacctcctcttcttctgatgcttatctatcagcggttagtctttc |
200 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33800181 |
tgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaaaacctcctcttcttctgatgcttatctatcagcggttagtctttc |
33800082 |
T |
|
| Q |
201 |
aggaccaagatagcaataataactc--tgtannnnnnnnnnnnnnnnnnnacttaaatcactttcggtctctgtatttatggaatcacggttttagtccc |
298 |
Q |
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||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
33800081 |
aggaccaagatagcaataatagctctatgtattttttttctttcttttttacttaaatcactttcgg--tctgtatttatggaatcacggttttaatccc |
33799984 |
T |
|
| Q |
299 |
ctatttttaaatatgaaatatagtcccttagtttttaaatatcataatttttccctaccactcaatttgtaacaatatattata |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33799983 |
ctatttttaaatatgaaatatagtcccttagtttttaaatatcataatttttccctaccactcaatttgtaacaatatattata |
33799900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33813559 - 33813784
Alignment:
| Q |
1 |
gatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33813559 |
gatgagaatgatgatagggtacattgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
33813658 |
T |
|
| Q |
101 |
tgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaacacctcctcttcttctgatgcttatctatcagcggttagtctttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
33813659 |
tgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaacacctcctcttcttctgatgcttatctatcagcagttggtctttc |
33813758 |
T |
|
| Q |
201 |
aggaccaagatagcaataataactct |
226 |
Q |
| |
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|| ||||||||||||||||| |||| |
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| T |
33813759 |
tggcccaagatagcaataatagctct |
33813784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 31029235 - 31029446
Alignment:
| Q |
9 |
tgatgatagggttcattgtgctataaatgttacattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaatgttagag |
108 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31029235 |
tgatgatagggttcactgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacagaagttgttcaaatgttagag |
31029334 |
T |
|
| Q |
109 |
ggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaacacctcctcttcttctgatgcttatctatcagcggttagtctttcaggaccaa |
208 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| ||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
31029335 |
ggtctttgtactgttcctaaaccaccaaagtcctccaatgaaggagatacc------tcttctgatgcttatctatcagcagttagtctttcaggtccaa |
31029428 |
T |
|
| Q |
209 |
gatagcaataataactct |
226 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
31029429 |
gatagcaataatagctct |
31029446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 33804745 - 33804591
Alignment:
| Q |
1 |
gatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33804745 |
gatgagaatgatgatagggtacattgtgctataagtgttgcattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
33804646 |
T |
|
| Q |
101 |
tgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaa |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33804645 |
tgttagagggtctttgcactgttcctaaaccaccaaaatcctctaatgaaggaaa |
33804591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 6351509 - 6351381
Alignment:
| Q |
66 |
gtctatgagaccttccatgacaaaagttgttcaaatgttagagggtctttgcactgttcctaaaccgccaaaatcctctaatgaaggaaacacctcctct |
165 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| || ||||||||| || ||||| |
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| T |
6351509 |
gtctttgagaccttccaggacaaaagttgttcaaatgttagagggtatttgcactgttccataaccaccaaaatcttccaatgaaggatacccctcc--- |
6351413 |
T |
|
| Q |
166 |
tcttctgatgcttatctatcagcggttagtct |
197 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||| |
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|
| T |
6351412 |
tcttgtgatgcttatctatcagcagtttgtct |
6351381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 31029534 - 31029588
Alignment:
| Q |
314 |
aaatatagtcccttagttttt-aaatatcataatttttccctaccactcaatttg |
367 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||| |||||||| |||||| |
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| T |
31029534 |
aaatacagtcccttagtttttaaaatatcatactttttcactaccactaaatttg |
31029588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 49464215 - 49464350
Alignment:
| Q |
1 |
gatgagaatgatgatagggttcattgtgctataaatgttacattgtggtgtatacaggaagacatgtctatgagaccttccatgacaaaagttgttcaaa |
100 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
49464215 |
gatgagcatgatgatagggttcaatgtgctataagggttgcattgtggtgtatacaagaagacatgtctatgagaccttcaatgaccaaagttgttcaaa |
49464314 |
T |
|
| Q |
101 |
tgttagagggtctttgcactgttcctaaaccgccaa |
136 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||| |
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|
| T |
49464315 |
tgttggagggtctctgcactgttcctaaaccaccaa |
49464350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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