View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19068_high_4 (Length: 384)
Name: NF19068_high_4
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19068_high_4 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 51458467 - 51458103
Alignment:
| Q |
8 |
catcatcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaattt |
107 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458467 |
catcatcattagtgtcagagagttggtgaaacatatcaaccgcctccccatcaccatgtagctccctcttatcttgctcaaggtgcttacgcgtcaattt |
51458368 |
T |
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| Q |
108 |
cttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattac---nnnnnnnntaataaacat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51458367 |
cttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattacaaaaaaaaaaaaaataaacat |
51458268 |
T |
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| Q |
205 |
ttaattttcctcataataaaatattcacttggagnnnnnnntcaatagttataaagtgctaacaaagaattgatcaggaaatgcatcattcattattcaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51458267 |
ttaattttcctcataataaaatattcacttggagaaaaaaatcaatagttataaagtgctaacaaagaattgatcaggaaatgcatcattcattattcaa |
51458168 |
T |
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| Q |
305 |
gtcctaaaaatactttgcagtttatgccactggtcataaaaagaatacttttttgagtcattatt |
369 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51458167 |
gtcctaaaaatactttgcagtttatgccacttgtcataaaaagaatacttttttgagtcattatt |
51458103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 51482950 - 51482835
Alignment:
| Q |
57 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatga |
156 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| | |||| ||||| |||| || ||| |||||| ||| | || ||||| ||| |||||| |
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| T |
51482950 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttgtgtcagtttctcaatggcagcaatgccctcagatttcaatttcacttcagcaatatga |
51482851 |
T |
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| Q |
157 |
gtcaacacatttacct |
172 |
Q |
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|||||||||||||||| |
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| T |
51482850 |
gtcaacacatttacct |
51482835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 51499790 - 51499733
Alignment:
| Q |
57 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatg |
114 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
51499790 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttctgtcaatttcttaatg |
51499733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 43162733 - 43162513
Alignment:
| Q |
12 |
atcattagtgtcaaagagttggtgaaacatatcaaccgcctccccatcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttctta |
111 |
Q |
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|||||||||||| || || | ||||| || |||||| |||| | |||| ||| || |||||||||||||||||||||||||| | ||||||||||| |
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| T |
43162733 |
atcattagtgtcggagtgtcgatgaaatatttcaaccacctctcgatcaccataaaggtccctcttatcttgctcaaggtgcttctgtctcaatttctta |
43162634 |
T |
|
| Q |
112 |
atgacactaatttcctcaggttttagttccactttagcgatatgagtcaacacatttaccttatagccaaattacnnnnnnnntaataaacatttaattt |
211 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
43162633 |
atgacattaatttcctcaggtttcagttccactttagcgatatgcgtcaacacatttaccttatagtcaaattacaaaaaaaaga--aaacatttaattt |
43162536 |
T |
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| Q |
212 |
tcctcataataaaatattcactt |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
43162535 |
tcctcataataaaatattcactt |
43162513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 20867027 - 20867142
Alignment:
| Q |
57 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatga |
156 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| || ||||| ||||| || |||| | ||| || |||||||||||||| | |||| |
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| T |
20867027 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttctgttaattttttaattgcagtaatgctcacagtttccagttccactttagcaacatga |
20867126 |
T |
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| Q |
157 |
gtcaacacatttacct |
172 |
Q |
| |
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|||||||||||||||| |
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| T |
20867127 |
gtcaacacatttacct |
20867142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 27398476 - 27398420
Alignment:
| Q |
57 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaat |
113 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
27398476 |
atcaccatgtagctccctcttgtcttgctcaaggtgcttttgtttcaatttcttaat |
27398420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 135782 - 135888
Alignment:
| Q |
65 |
gtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatgacactaatttcctcaggttttagttccactttagcgatatgagtcaacac |
164 |
Q |
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||||||||||||| ||||||||||||||||| | |||||||||||||| || |||| ||||| || |||||||| ||||| |||||||||||||| |
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| T |
135782 |
gtagctccctcttgtcttgctcaaggtgcttttgtgtcaatttcttaattgcagtaatactctcagtttccagttccac-ttagcaatatgagtcaacac |
135880 |
T |
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| Q |
165 |
atttacct |
172 |
Q |
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|||||||| |
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| T |
135881 |
atttacct |
135888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 36549861 - 36549804
Alignment:
| Q |
57 |
atcatcatgtagctccctcttatcttgctcaaggtgcttacgcgtcaatttcttaatg |
114 |
Q |
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|||| |||||||| ||||||||||||||||||||||||| | |||||||||||||| |
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| T |
36549861 |
atcaccatgtagcaccctcttatcttgctcaaggtgcttttgtatcaatttcttaatg |
36549804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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