View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19068_high_8 (Length: 247)
Name: NF19068_high_8
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19068_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4712793 - 4712560
Alignment:
| Q |
1 |
tcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712793 |
tcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaata |
4712694 |
T |
|
| Q |
101 |
tcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712693 |
tcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttccaat |
4712594 |
T |
|
| Q |
201 |
gactttctttcatttcaaattgagattcaaatct |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
4712593 |
gactttctttcatttcaaattgagattcaaatct |
4712560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4846748 - 4846515
Alignment:
| Q |
1 |
tcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaata |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| | || |||||||||||| |
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| T |
4846748 |
tcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttgccgaaccctccagctccaatgataaaaata |
4846649 |
T |
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| Q |
101 |
tcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttccaat |
200 |
Q |
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| T |
4846648 |
tcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatg |
4846549 |
T |
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| Q |
201 |
gactttctttcatttcaaattgagattcaaatct |
234 |
Q |
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|||||||| ||||| || | |||||||||||| |
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| T |
4846548 |
aactttcttccatttgaagattagattcaaatct |
4846515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 4784550 - 4784346
Alignment:
| Q |
13 |
tttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttg |
112 |
Q |
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|||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4784550 |
tttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttg |
4784451 |
T |
|
| Q |
113 |
tttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttccaatgactttctttca |
212 |
Q |
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|||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |||| ||||||| || ||| ||||||| |||||||| || |
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| T |
4784450 |
tttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaactttcttcca |
4784351 |
T |
|
| Q |
213 |
tttca |
217 |
Q |
| |
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||||| |
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| T |
4784350 |
tttca |
4784346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 4816979 - 4816810
Alignment:
| Q |
13 |
tttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttg |
112 |
Q |
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|||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4816979 |
tttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttg |
4816880 |
T |
|
| Q |
113 |
tttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaacctt |
182 |
Q |
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|||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
4816879 |
tttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaacctt |
4816810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 45 - 230
Target Start/End: Complemental strand, 4697873 - 4697688
Alignment:
| Q |
45 |
catcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaa |
144 |
Q |
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|||| |||||||||||| ||||||| || || |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |
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| T |
4697873 |
catcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaa |
4697774 |
T |
|
| Q |
145 |
acatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttccaatgactttctttcatttcaaattgagattcaa |
230 |
Q |
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| | || |||||||||||||||||| |||| |||||||| || || || |||| |||||||| |||||||| |||||||||| |
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| T |
4697773 |
atagcggcacaaatgggatggtaaagttgacgaaccttcttttcttgtcctccatgaactttcttccatttcaatatgagattcaa |
4697688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 4863290 - 4863446
Alignment:
| Q |
13 |
tttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttg |
112 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||| |
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| T |
4863290 |
tttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttg |
4863389 |
T |
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| Q |
113 |
tttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaa |
169 |
Q |
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|||||||| |||||||| || ||| |||||| | || |||||||||||||||||| |
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|
| T |
4863390 |
tttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaa |
4863446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 4652928 - 4653025
Alignment:
| Q |
20 |
cgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgt |
117 |
Q |
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||||||||||||||||| ||| |||||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||| ||| |||||||| ||||| |
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| T |
4652928 |
cgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgt |
4653025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 4643146 - 4643212
Alignment:
| Q |
54 |
aacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagc |
120 |
Q |
| |
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||||||||||||||||||| || |||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
4643146 |
aacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagc |
4643212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 4666377 - 4666449
Alignment:
| Q |
54 |
aacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctct |
126 |
Q |
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||||||||||||||||||| || |||||||| |||||||| ||| ||| || ||||||||||| || ||||| |
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| T |
4666377 |
aacctttgtacacgttgccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctct |
4666449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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