View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19068_low_1 (Length: 495)
Name: NF19068_low_1
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19068_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 217 - 477
Target Start/End: Original strand, 44113526 - 44113786
Alignment:
| Q |
217 |
gacaaagtatcttttgcttatatagagagaaatcaccatatcaatttattaggctaattttaaatagacttaaatacattttagtttcctaatttaacaa |
316 |
Q |
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| T |
44113526 |
gacaaagtatcttttgcttatatagagagaaatcaccatatcaatttattaggctaattttaaatagacttaaatacattttagtttcctaatttaacaa |
44113625 |
T |
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| Q |
317 |
atcttagattttttccataatcgattgagagttannnnnnnatgacatgtcattttcattaataatataaaattatatttgataatatgatatctaattt |
416 |
Q |
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| T |
44113626 |
atcttagattttttccataatcgatcgagacttatttttttatgacatgtcattttcattaataatataaaattatatttgataatatgatatctaattt |
44113725 |
T |
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| Q |
417 |
gcactagaaaccttgttacaatattttttcggtgttgttgatcaaatgtaaacttattctt |
477 |
Q |
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| T |
44113726 |
gcactagaaaccttgttacaatattttttcggtgttgttgatcaaatgtaaacttattctt |
44113786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 44113314 - 44113437
Alignment:
| Q |
10 |
ataatactattgactttctttgtggctaatattagtaaaacttatttttggagttttattagtaaaacttattaaagttacttgtgtaaaagtgatatgc |
109 |
Q |
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| T |
44113314 |
ataatactattgactttctttgtggctaatattagtaaaacttatttttggagttttattagtaaaacttattaaagttacttgtgtaaaagtgatatgc |
44113413 |
T |
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| Q |
110 |
acatgcttaaatgaattaagttgc |
133 |
Q |
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| T |
44113414 |
acatgcttaaatgaattaagttgc |
44113437 |
T |
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