View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19068_low_10 (Length: 250)

Name: NF19068_low_10
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19068_low_10
NF19068_low_10
[»] chr7 (14 HSPs)
chr7 (10-235)||(22069480-22069705)
chr7 (10-235)||(22063011-22063236)
chr7 (10-235)||(22080225-22080450)
chr7 (23-195)||(22088002-22088174)
chr7 (113-220)||(20375073-20375180)
chr7 (174-232)||(6865428-6865486)
chr7 (182-232)||(20338308-20338358)
chr7 (23-70)||(20338458-20338505)
chr7 (174-232)||(20141449-20141507)
chr7 (33-70)||(661187-661224)
chr7 (123-191)||(661262-661330)
chr7 (26-70)||(6865292-6865336)
chr7 (174-222)||(20126769-20126817)
chr7 (120-232)||(20133894-20134005)
[»] chr1 (1 HSPs)
chr1 (120-232)||(15960591-15960703)
[»] chr4 (1 HSPs)
chr4 (114-190)||(11982290-11982366)
[»] chr5 (2 HSPs)
chr5 (23-58)||(29641902-29641937)
chr5 (120-148)||(23086148-23086176)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 22069705 - 22069480
Alignment:
Q  10 catcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtcctctctatagccagt 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22069705 catcatcaccatgaaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtcctctctatagccagt 22069606  T
Q  110 tccgccaaataagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttggaagattgataatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||    
T  22069605 tccgccaaataagcaaagcaatccattgcaggaaccaactatgtagcggaaagccttgtcgttcagtggatagtaaggatctcttggaagattgataatg 22069506  T
Q  210 attggagggttctcgagcaaacggaa 235  Q
    ||||||||||||||||||||||||||    
T  22069505 attggagggttctcgagcaaacggaa 22069480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 22063236 - 22063011
Alignment:
Q  10 catcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtcctctctatagccagt 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063236 catcatcaccatgaaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtcctctctatagccagt 22063137  T
Q  110 tccgccaaataagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttggaagattgataatg 209  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||| | |||||||||||||||||    
T  22063136 tccgccaaataagcaaagcaatccattgcaggaaccaacgatgtagtggcaatccttgtcattcagttgatggtaaggattttttggaagattgataatg 22063037  T
Q  210 attggagggttctcgagcaaacggaa 235  Q
    ||||||||||||||||||||||||||    
T  22063036 attggagggttctcgagcaaacggaa 22063011  T

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Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 22080450 - 22080225
Alignment:
Q  10 catcatcaccatgtaatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtcctctctatagccagt 109  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  22080450 catcatcaccatctaatttttctgatattgtccttgtggctgggttccaaaaacgaagccaattctctctataccccccagtgtcctctctattgccagt 22080351  T
Q  110 tccgccaaataagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttggaagattgataatg 209  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |  ||| ||||| ||||| ||| |||||||||||| | ||| |||||||||||||    
T  22080350 tccgccaaataagcaaagcaatccattgcaggaaccaacaatgtggaagcagtccttttccttgagtcgatagtaaggatattttgaaagattgataatg 22080251  T
Q  210 attggagggttctcgagcaaacggaa 235  Q
    || |||||||||||||||||||||||    
T  22080250 atgggagggttctcgagcaaacggaa 22080225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 22088174 - 22088002
Alignment:
Q  23 taatttttctgatattatccttgtggctgggttccaaaaacgaagccaattctctctataccccccattgtcctctctatagccagttccgccaaataag 122  Q
    |||||||||||||||| |||||||||| |||||||||| |||||  || |||||||||||||| || | |||| |||||||  || ||||||| ||||||    
T  22088174 taatttttctgatattgtccttgtggccgggttccaaacacgaattcatttctctctataccctccttcgtccgctctatactcacttccgccgaataag 22088075  T
Q  123 caaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttg 195  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||    
T  22088074 caaagcaatccattgcaggaaccaatgatgtagcggcaatccttgtccgtcagttgatagtaaggatctcttg 22088002  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 20375073 - 20375180
Alignment:
Q  113 gccaaataagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttggaagattgataatgatt 212  Q
    |||||| ||||| || ||||||||||| || |||||||||| | |||  |  ||||| |  ||||||||||||||||||  ||||||||||| |||||||    
T  20375073 gccaaacaagcagagtaatccattgcaagagccaactatgtcgaggccgtgtttgtcatcaagttgatagtaaggatcttctggaagattgaaaatgatt 20375172  T
Q  213 ggagggtt 220  Q
    ||||||||    
T  20375173 ggagggtt 20375180  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 6865428 - 6865486
Alignment:
Q  174 agttgatagtaaggatctcttggaagattgataatgattggagggttctcgagcaaacg 232  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||||||    
T  6865428 agttgataataaggatctccaggaagattgataatgattggagggtactcaagcaaacg 6865486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 20338358 - 20338308
Alignment:
Q  182 gtaaggatctcttggaagattgataatgattggagggttctcgagcaaacg 232  Q
    ||||||||||  |||||||| ||||||||||||||| ||||||||||||||    
T  20338358 gtaaggatcttctggaagatcgataatgattggaggattctcgagcaaacg 20338308  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 20338505 - 20338458
Alignment:
Q  23 taatttttctgatattatccttgtggctgggttccaaaaacgaagcca 70  Q
    ||||||| | |||||| |||||||||| ||||||||||||||||||||    
T  20338505 taattttgcagatattttccttgtggcagggttccaaaaacgaagcca 20338458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 20141449 - 20141507
Alignment:
Q  174 agttgatagtaaggatctcttggaagattgataatgattggagggttctcgagcaaacg 232  Q
    ||||||| || |||||||  ||| ||||||||||||||||||||||| | |||||||||    
T  20141449 agttgatggttaggatcttctggtagattgataatgattggagggttgtggagcaaacg 20141507  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 661187 - 661224
Alignment:
Q  33 gatattatccttgtggctgggttccaaaaacgaagcca 70  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  661187 gatattgtccttgtggccgggttccaaaaacgaagcca 661224  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 661262 - 661330
Alignment:
Q  123 caaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatct 191  Q
    ||||||||||||||||| |||||||| || | ||||||||  |||||    ||||||||||||||||||    
T  661262 caaagcaatccattgcaagaaccaacaatatggcggcaatatttgtcagcaagttgatagtaaggatct 661330  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 6865292 - 6865336
Alignment:
Q  26 tttttctgatattatccttgtggctgggttccaaaaacgaagcca 70  Q
    |||||| |||| | ||||| |||||||||||||||||||||||||    
T  6865292 tttttccgataatttccttatggctgggttccaaaaacgaagcca 6865336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 20126769 - 20126817
Alignment:
Q  174 agttgatagtaaggatctcttggaagattgataatgattggagggttct 222  Q
    ||||||||||| |||||  |||||||||||| ||||| |||||||||||    
T  20126769 agttgatagtatggatcctttggaagattgaaaatgaatggagggttct 20126817  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 20133894 - 20134005
Alignment:
Q  120 aagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttggaagattgataatgattggagggt 219  Q
    ||||| || ||||||||||| |||||||| |  ||  | || ||||||| | | ||||||| || |||||||  |||||||||| || ||||||||||||    
T  20133894 aagcagagtaatccattgcatgaaccaacaacataatgacagtccttgttcgtaagttgatggttaggatcttctggaagattggta-tgattggagggt 20133992  T
Q  220 tctcgagcaaacg 232  Q
    ||| |||||||||    
T  20133993 tctggagcaaacg 20134005  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 15960703 - 15960591
Alignment:
Q  120 aagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatctcttggaagattgataatgattggagggt 219  Q
    |||||||||||||||||||| |||||||| || |||   ||||||||||| || | |||||| ||||||||| | |||||||| | ||||||||||||||    
T  15960703 aagcaaagcaatccattgcaagaaccaacaatatagacacaatccttgtctttaaattgataataaggatctttgggaagattaaaaatgattggagggt 15960604  T
Q  220 tctcgagcaaacg 232  Q
    | |||||||||||    
T  15960603 tttcgagcaaacg 15960591  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 11982290 - 11982366
Alignment:
Q  114 ccaaataagcaaagcaatccattgcaggaaccaactatgtagcggcaatccttgtccttcagttgatagtaaggatc 190  Q
    ||||| ||||||||||| ||||||||||||||||  || | |   || |||||||||||||||||||||||||||||    
T  11982290 ccaaacaagcaaagcaaaccattgcaggaaccaataatatggacacagtccttgtccttcagttgatagtaaggatc 11982366  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 29641937 - 29641902
Alignment:
Q  23 taatttttctgatattatccttgtggctgggttcca 58  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29641937 taatttttccgatattatccttgtggctgggttcca 29641902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 23086176 - 23086148
Alignment:
Q  120 aagcaaagcaatccattgcaggaaccaac 148  Q
    |||||||||||||||||||||||||||||    
T  23086176 aagcaaagcaatccattgcaggaaccaac 23086148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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