View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19068_low_2 (Length: 480)
Name: NF19068_low_2
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19068_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 35040600 - 35040969
Alignment:
| Q |
9 |
gaagaatatgtcctggaatctcatttagtcttcagctgatgcaaataacacttgctactttattgcatggatttgacattgtgactaaagatggaggacc |
108 |
Q |
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| T |
35040600 |
gaagaatatgtcctggaatctcatttagtcttcagctgatgcaaataacacttgctactttattgcatgggtttgacattgtgactaaagatggaggacc |
35040699 |
T |
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| Q |
109 |
agttgatatggttgaacaaagcggactcaccacaatcaaagcctctccacttgaagtcattcttactccacgtttgtctaccgaagcttttagtcaaaat |
208 |
Q |
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| T |
35040700 |
agttgatatggttgaacaaagcggactcaccacaatcaaagcctctccacttgaagtcattcttactccacgtttgtctaccgaagcttttagtcaaaat |
35040799 |
T |
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| Q |
209 |
taatactctaggttaagtcacaaaattaatcttcaacgttgtgccaaataaatgcaagtacaagcatagttcttgttctccaatttttgctatattgcaa |
308 |
Q |
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| T |
35040800 |
taatgctctaggttaagtcacaaaattaatcttcaacgttgtgccaattaaatgcaagtacaagcatagttcttgttctccaatttttgctatattgcag |
35040899 |
T |
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| Q |
309 |
aatttgatagtaactttgtggctttggtgtaccgaccttggaaaactttggtgcctacaaagttgcattt |
378 |
Q |
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| T |
35040900 |
aatttgatagtaactttgtggctttggtgtaccgaccttggaaaactttggtgcctacaaagttgcattt |
35040969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 35048222 - 35048399
Alignment:
| Q |
9 |
gaagaatatgtcctggaatctcatttagtcttcagctgatgcaaataacacttgctactttattgcatggatttgacattgtgactaaagatggaggacc |
108 |
Q |
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| T |
35048222 |
gaagaatgtgtcccggaatatcatttggtcttaagctaattcaaataacacttgcaactttgttgcatggatttgatatagtgactcaagatggaggacc |
35048321 |
T |
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| Q |
109 |
agttgatatggttgaacaaagcggactcaccacaatcaaagcctctccacttgaagtcattcttactccacgtttgtc |
186 |
Q |
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| T |
35048322 |
agttggtatggttgaacaaagtggactgaccaacgtcaaagcatctcctctagaagtcattcttactccacgtttgtc |
35048399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 35026637 - 35026814
Alignment:
| Q |
9 |
gaagaatatgtcctggaatctcatttagtcttcagctgatgcaaataacacttgctactttattgcatggatttgacattgtgactaaagatggaggacc |
108 |
Q |
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| T |
35026637 |
gaagaatgtgtcctggaatctcatttggtcttcaacttatgcaaataacacttgctacattgttgcatgggtttgacatagtgacttcagatggaggacc |
35026736 |
T |
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| Q |
109 |
agttgatatggttgaacaaagcggactcaccacaatcaaagcctctccacttgaagtcattcttactccacgtttgtc |
186 |
Q |
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| T |
35026737 |
ggttgatatggttgaaataagtggaatgaccaacatcaaagcttctcctctacaagtcatccttagtccacgtttgtc |
35026814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 35032583 - 35032760
Alignment:
| Q |
9 |
gaagaatatgtcctggaatctcatttagtcttcagctgatgcaaataacacttgctactttattgcatggatttgacattgtgactaaagatggaggacc |
108 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | || |||||||| ||| |||| |||||| ||||||||||||| |
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| T |
35032583 |
gaagaatatgtcctggaatctcatttagtcttcagttgatgcaaatcacacttgctgcattgttgcatgggtttaacatagtgactcaagatggaggacc |
35032682 |
T |
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| Q |
109 |
agttgatatggttgaacaaagcggactcaccacaatcaaagcctctccacttgaagtcattcttactccacgtttgtc |
186 |
Q |
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| T |
35032683 |
agttaatatggttgaacactgtagactgaccaatgtcaaagcctctcctttacaagtcattcttaatccgcgtttgtc |
35032760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 35040995 - 35041079
Alignment:
| Q |
377 |
tttgtaggtatggggtgtgattcagtgaacaatttccttctcttcatttagaagtgtaattaaaaaggaaaataaatgcacgaca |
461 |
Q |
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| T |
35040995 |
tttgtaggtatggggtgtgattcagtgaacaatttccttttcttcatttacaagtgtaattaaaaaggaaaataaatgcacgaca |
35041079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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