View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19068_low_4 (Length: 410)

Name: NF19068_low_4
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19068_low_4
NF19068_low_4
[»] chr1 (3 HSPs)
chr1 (14-115)||(24619924-24620020)
chr1 (192-346)||(22571268-22571421)
chr1 (221-346)||(11805986-11806111)
[»] scaffold0049 (2 HSPs)
scaffold0049 (65-182)||(40506-40618)
scaffold0049 (237-346)||(40338-40445)
[»] chr7 (2 HSPs)
chr7 (65-182)||(23690240-23690352)
chr7 (237-314)||(23690102-23690179)
[»] chr6 (2 HSPs)
chr6 (81-182)||(2878200-2878297)
chr6 (237-314)||(2878358-2878435)
[»] chr4 (1 HSPs)
chr4 (81-182)||(9346373-9346470)
[»] chr3 (1 HSPs)
chr3 (203-272)||(21322706-21322778)
[»] scaffold0718 (1 HSPs)
scaffold0718 (92-182)||(1209-1295)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 24619924 - 24620020
Alignment:
Q  14 tactttaattagcacatatcataaccaatgagattttgtgtatgagtgtcgatccatgttcgaatgtttattttgctcgagcttgcattgcttctctaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  24619924 tactttaattagcacatatcataaccaatgagattttgtgtatgagtg----tccatg-tcgaatgtttattttgctcgagcttgcattgcttctctaca 24620018  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 346
Target Start/End: Complemental strand, 22571421 - 22571268
Alignment:
Q  192 atgttttcaattgctaatccactatgagcctccatgcaatattctttgttttg-gtgatgaatgatgtcacaagttttgaacctaagacattctacctgt 290  Q
    ||||| || |||||||| ||||| ||||  ||||||| || |||||||||||  ||||  ||  ||||||||||||||||||| |  | ||| || ||||    
T  22571421 atgttatccattgctaacccactttgagtttccatgcgattttctttgttttttgtgacaaaccatgtcacaagttttgaacccacaatattttatctgt 22571322  T
Q  291 ttgatttatttggagttagatagactggtaagtttacttgatattggtttgaaact 346  Q
    || ||||||||||||||||||||| |  ||||| ||  ||||||||||||||||||    
T  22571321 ttaatttatttggagttagatagaatcttaagtata--tgatattggtttgaaact 22571268  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 346
Target Start/End: Complemental strand, 11806111 - 11805986
Alignment:
Q  221 ctccatgcaatattctttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggta 320  Q
    ||||||||||||||| ||||||||| ||| ||  ||  || ||||||| ||| ||| |  || || |||||| |||| |||| | |||| |||| |  ||    
T  11806111 ctccatgcaatattcgttgttttggggataaaccataacaaaagttttaaacttaaaatgttataactgtttaatttctttgcatttagttagaataata 11806012  T
Q  321 agtttacttgatattggtttgaaact 346  Q
    ||||||||||||||||||||| ||||    
T  11806011 agtttacttgatattggtttgcaact 11805986  T

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Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 40618 - 40506
Alignment:
Q  65 atccatgttcgaatgtttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactc 164  Q
    ||||||||| ||||||| ||||| || || |||| |||| |||||||||||||||   |||| ||||| |||||||||||| |||| |||| || |||||    
T  40618 atccatgtttgaatgtt-atttttctggaacttgaattggttctctacagactat---tggccgtattttcatacacacgaggcac-ttgtttggtactc 40524  T
Q  165 taagccttttcaagccac 182  Q
    | ||||||||||||||||    
T  40523 tgagccttttcaagccac 40506  T

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Target: scaffold0049; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 40445 - 40338
Alignment:
Q  237 ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagatagactggtaagtttacttgatattg 336  Q
    |||||||||||| |||  ||||||||||||||||||| |    ||| || |||||| |||| |||||||||||||||| |  || |  |||||| |||||    
T  40445 ttgttttggtgacgaaccatgtcacaagttttgaacccactttattatatctgtttaatttctttggagttagatagagtcatagg--tacttggtattg 40348  T
Q  337 gtttgaaact 346  Q
    ||||||||||    
T  40347 gtttgaaact 40338  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 23690352 - 23690240
Alignment:
Q  65 atccatgttcgaatgtttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactc 164  Q
    ||||||||| ||||||| ||||| || |||||||||||| |||||||||||||||   |||   |||| |||||||||| | |||| |||| || |||||    
T  23690352 atccatgtttgaatgtt-atttttctagagcttgcattggttctctacagactat---tggtcatattttcatacacaccaggcac-ttgtttggtactc 23690258  T
Q  165 taagccttttcaagccac 182  Q
    | ||||||||||||||||    
T  23690257 tgagccttttcaagccac 23690240  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 23690179 - 23690102
Alignment:
Q  237 ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagataga 314  Q
    |||||||||||| |||  ||||||||||||||||||| |  | ||| || |||||| |||| ||||||||||||||||    
T  23690179 ttgttttggtgacgaaccatgtcacaagttttgaacccactatattatatctgtttaatttctttggagttagataga 23690102  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 2878200 - 2878297
Alignment:
Q  81 ttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagcc 180  Q
    ||||||| || |||||||||||| |||||||||||||   |||||  ||||| |||||||||||| |||  |||| || |||||| ||||||||||||||    
T  2878200 ttatttttctagagcttgcattggttctctacagact---attggtcgtattttcatacacacgaggca-tttgtttggtactctgagccttttcaagcc 2878295  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 2878358 - 2878435
Alignment:
Q  237 ttgttttggtgatgaatgatgtcacaagttttgaacctaagacattctacctgtttgatttatttggagttagataga 314  Q
    ||||||||| || |||  ||||||||||||||||||| |  | ||| || |||||| |||| ||||||||||||||||    
T  2878358 ttgttttggcgacgaaccatgtcacaagttttgaacccactatattatatctgtttaatttctttggagttagataga 2878435  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 9346470 - 9346373
Alignment:
Q  81 ttattttgctcgagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagcc 180  Q
    ||||||| |||||| ||||| || |||||||||| ||||   |||  ||||| |||||||||||| |||| |||| || |||||| ||||||||||||||    
T  9346470 ttattttcctcgagtttgcactggttctctacagtctat---tggtcgtattgtcatacacacgaggcac-ttgtttggtactctgagccttttcaagcc 9346375  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 21322706 - 21322778
Alignment:
Q  203 tgctaatccactatgagcctccatgcaatattct---ttgttttggtgatgaatgatgtcacaagttttgaac 272  Q
    |||||||||||| |||||||||||| ||| ||||   ||||||||||||||||  |||||| || ||||||||    
T  21322706 tgctaatccactttgagcctccatgaaattttctttgttgttttggtgatgaaccatgtcataaattttgaac 21322778  T

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Target: scaffold0718 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 1209 - 1295
Alignment:
Q  92 gagcttgcattgcttctctacagactataattggctgtattctcatacacacgatgcacattgtatgatactctaagccttttcaagccac 182  Q
    |||||||||||| |||||||||||||    |||||  |||| || ||||||||| |||| |||| || |||||| ||||||||||||||||    
T  1209 gagcttgcattggttctctacagact---gttggccatattttcgtacacacgaggcac-ttgtttggtactctgagccttttcaagccac 1295  T

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