View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19068_low_9 (Length: 281)

Name: NF19068_low_9
Description: NF19068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19068_low_9
NF19068_low_9
[»] chr4 (14 HSPs)
chr4 (6-105)||(53780188-53780287)
chr4 (14-105)||(10563207-10563298)
chr4 (177-264)||(53780359-53780446)
chr4 (177-264)||(10563070-10563157)
chr4 (177-264)||(20395896-20395983)
chr4 (177-264)||(34322058-34322145)
chr4 (12-102)||(42778387-42778477)
chr4 (14-105)||(20395747-20395838)
chr4 (177-264)||(53486692-53486779)
chr4 (7-102)||(53486854-53486949)
chr4 (7-102)||(34322220-34322315)
chr4 (177-264)||(42778552-42778639)
chr4 (7-102)||(18106457-18106552)
chr4 (7-102)||(30273713-30273808)
[»] chr6 (12 HSPs)
chr6 (14-105)||(17873716-17873807)
chr6 (177-264)||(18051188-18051275)
chr6 (177-264)||(17078930-17079017)
chr6 (186-264)||(17873558-17873636)
chr6 (177-264)||(649805-649892)
chr6 (12-102)||(9199153-9199243)
chr6 (7-105)||(17079089-17079187)
chr6 (14-103)||(11060759-11060848)
chr6 (177-264)||(9198991-9199078)
chr6 (177-264)||(11060601-11060688)
chr6 (14-105)||(18051347-18051438)
chr6 (69-105)||(649964-650000)
[»] chr7 (7 HSPs)
chr7 (14-105)||(7458569-7458660)
chr7 (177-263)||(4077589-4077675)
chr7 (179-264)||(34232015-34232100)
chr7 (7-102)||(34231843-34231938)
chr7 (177-235)||(7458439-7458497)
chr7 (14-105)||(4077426-4077517)
chr7 (185-263)||(17856058-17856136)
[»] chr8 (6 HSPs)
chr8 (7-105)||(23680306-23680404)
chr8 (14-95)||(45255736-45255817)
chr8 (177-257)||(45255575-45255655)
chr8 (12-103)||(17658980-17659071)
chr8 (177-264)||(23680476-23680563)
chr8 (177-264)||(17659145-17659232)
[»] scaffold0179 (4 HSPs)
scaffold0179 (14-105)||(7679-7770)
scaffold0179 (14-105)||(12613-12704)
scaffold0179 (177-264)||(7842-7929)
scaffold0179 (177-264)||(12776-12863)
[»] scaffold0007 (2 HSPs)
scaffold0007 (177-264)||(182429-182516)
scaffold0007 (14-105)||(182280-182371)
[»] chr5 (8 HSPs)
chr5 (14-105)||(20208617-20208708)
chr5 (12-105)||(7000663-7000756)
chr5 (177-264)||(4415439-4415526)
chr5 (6-105)||(6049366-6049465)
chr5 (177-264)||(20208458-20208545)
chr5 (177-257)||(6049535-6049615)
chr5 (12-102)||(4415601-4415691)
chr5 (177-264)||(7000504-7000591)
[»] chr3 (12 HSPs)
chr3 (14-105)||(26846018-26846109)
chr3 (177-264)||(26846181-26846268)
chr3 (6-105)||(47537411-47537510)
chr3 (177-264)||(47537582-47537669)
chr3 (177-264)||(48192113-48192200)
chr3 (177-264)||(50544538-50544625)
chr3 (14-104)||(50544375-50544465)
chr3 (7-102)||(48191943-48192038)
chr3 (7-83)||(33121237-33121313)
chr3 (182-225)||(46908447-46908490)
chr3 (194-227)||(8943679-8943712)
chr3 (25-69)||(19222260-19222304)
[»] chr1 (10 HSPs)
chr1 (177-264)||(17708293-17708380)
chr1 (177-264)||(10710900-10710987)
chr1 (177-264)||(30110664-30110751)
chr1 (14-105)||(26720812-26720903)
chr1 (177-264)||(26720947-26721034)
chr1 (12-104)||(10711060-10711152)
chr1 (177-251)||(47106435-47106509)
chr1 (6-105)||(47106579-47106677)
chr1 (7-102)||(17708123-17708218)
chr1 (7-99)||(30110829-30110921)
[»] scaffold0912 (1 HSPs)
scaffold0912 (177-264)||(2612-2699)
[»] chr2 (3 HSPs)
chr2 (12-102)||(1380231-1380321)
chr2 (182-264)||(1380401-1380483)
chr2 (7-102)||(2999649-2999744)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 53780188 - 53780287
Alignment:
Q  6 agtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53780188 agtgatatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacatcagtcaataaagc 53780287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 10563298 - 10563207
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  10563298 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctaaaacaaaatcttgcagagaaacatcagtcaataaagc 10563207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 53780359 - 53780446
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53780359 gctcaacaccaagagagaacaaacctgccatcgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 53780446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 10563157 - 10563070
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  10563157 gctcaacaccaagagagaacaaacctgccaccgtaatgggtttgttctcagaaagatcaaacaacctaggaaactgctcacaaaaaga 10563070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 20395896 - 20395983
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20395896 gctcaacaccaagagagaacaaacctgcgaccgaaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 20395983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 34322145 - 34322058
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  34322145 gctcaacaccaagagagaacaagtctgccaccgtaatggatttgttctcagcaagatcgaacaacctaggaaaccgctcacacaaaga 34322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 42778387 - 42778477
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    ||||||||||||||| |||||||  |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  42778387 atgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacagaatcttgcaaagaaacatcagtcaataa 42778477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 20395747 - 20395838
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  20395747 gaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 20395838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 53486779 - 53486692
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| ||||||||||  ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  53486779 gctctacaccaagagaaaacaagtctgccatcgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcaccaaaaga 53486692  T

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Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 53486949 - 53486854
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| ||||||| ||||||| |||||||  |||||| |||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||    
T  53486949 gtgatatgaaccacgaacagagtaacccacaatagggtctggcaaccacactcacctgtctgaaacaaaatctcgcaaagaaacatcagtcaataa 53486854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 34322315 - 34322220
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| ||||||| ||||||| |||||||   | ||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  34322315 gtgatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 34322220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 42778552 - 42778639
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| ||||||||||  |||||||||||||||| |||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||    
T  42778552 gctctacaccaagagaaaacaaatctgccaccgaaatgaatttattcacagagagatcgaacaacctaggaaaccgctcacaaaaaga 42778639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 18106552 - 18106457
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| |||||||  |||||| |||||||   | ||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  18106552 gtgatatgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 18106457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 30273808 - 30273713
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| ||||||| ||||||| |||||||  || ||| |||||||||||||||||||||||||||||| ||||||||| | ||| |||| |||||||    
T  30273808 gtgatatgaaccacgaacagagtaacccacaaaagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaaaaaatatcaatcaataa 30273713  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 17873807 - 17873716
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17873807 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacatcagtcaataaagc 17873716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 18051275 - 18051188
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18051275 gctcaacaccaagagagaacaaacctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 18051188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 17079017 - 17078930
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17079017 gctctacaccaagagagaacaaacctgccaccgtaatggatttgttctcagaaagaacaaacaacctaggaaaccgctcacaaaaaga 17078930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 17873636 - 17873558
Alignment:
Q  186 caagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17873636 caagagagaacaaacttgccaccgtaatgtatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 17873558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 649892 - 649805
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| ||||||||||  |||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  649892 gctctacaccaagagaaaacaagcctgccatcgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaaga 649805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 9199243 - 9199153
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    ||||||||||||||| |||||||  |||| | ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  9199243 atgaaccgcgaacagagtaacccacaatatggtctggcaaccaaacccacctgtctgaaacagaatctcgcaaagaaacatcagtcaataa 9199153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 17079187 - 17079089
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||| ||||||| |||||||| ||||||| || | | |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  17079187 gtgatatgaaccacgaacagtataaccctcaacaaggtctggcaaccacacccacttgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 17079089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 11060848 - 11060759
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaa 103  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||    
T  11060848 gaaccgcgaacagtgtaaccctcaaaagggtcaggcaaccacacccacctgtcagaaacataatctagcagagaaatatcagtcaataaa 11060759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 9199078 - 9198991
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| |||| |||||  ||||| |||||||||| |||| |||||||| |||||||||| |||||||||||||||||||||||||||||    
T  9199078 gctctacacaaagagaaaacaagtctgccaccgaaatgaatttgttcacagaaagatcgaacaacctaggaaaccgctcacaaaaaga 9198991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 11060688 - 11060601
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| |||||||||| ||||| | ||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||    
T  11060688 gctccacaccaagagagaacagacctgccactgtaatgtatttgttctcagaaagatcgaacaacctaggaaacctctcacagaaaga 11060601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 18051438 - 18051347
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| |||||||||||||||| || ||| || | ||||||||||||||||||||||| | ||||||||| | |||||| ||||||||||||    
T  18051438 gaaccacgaacagtgtaaccctcaacagggtcagacaaccacacccacctgtctgaaataaaatcttgcaaataaacattagtcaataaagc 18051347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 650000 - 649964
Alignment:
Q  69 aaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  650000 aaacaaaatcttgcaaagaaacatcagtcaataaagc 649964  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 7458660 - 7458569
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  7458660 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtcggaaacagaatcttgcagagaaacattagttaataaagc 7458569  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 4077589 - 4077675
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaag 263  Q
    ||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4077589 gctcaacaccaagagagaacaaacacgccaccgtaatggatttgttctcagaaagatcaaacaaccgaggaaaccgctcacaaaaag 4077675  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 34232015 - 34232100
Alignment:
Q  179 tcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||| |||||| |||||||||| |||||| || |||||||||||||| ||||| |||| |||||||||||| |||||    
T  34232015 tcaacaccaagagagaacaagtctgccaccgaaatggacttattctcagaaagatcgaacaatctagaaaaccgctcacacaaaga 34232100  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 34231843 - 34231938
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| ||||||| ||||||| ||||||    | ||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||    
T  34231843 gtgatatgaaccacgaacagagtaacctaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcattcaataa 34231938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 7458497 - 7458439
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatca 235  Q
    |||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||    
T  7458497 gctcaacaccaagcatgaacaagcctgccaccgtaatggatttgttctcagaaagatca 7458439  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 4077426 - 4077517
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||||||||| || || |||| |  ||| ||| |||||||||||||||||||||| ||| ||||||||| ||| ||||||  |||||||||    
T  4077426 gaaccgcgaactgtatagccctcagcagggtctagcaaccacacccacctgtctgacacaaaatcttgcaaagacacatcaaacaataaagc 4077517  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 17856058 - 17856136
Alignment:
Q  185 ccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaag 263  Q
    ||||||| ||||| ||  ||||||| ||||| |||||||||||  |  |||||||||||| |||||||||||| |||||    
T  17856058 ccaagagagaacatattcgccaccgaaatggttttgttctcagctaagtcaaacaacctacgaaaccgctcactaaaag 17856136  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 23680306 - 23680404
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  23680306 gtgatatgaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacagaatctagcaaagaaacatcagtcaataaagc 23680404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 45255817 - 45255736
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcag 95  Q
    |||||||||||||| || |||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  45255817 gaaccgcgaacagtatagccctcaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcag 45255736  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 45255655 - 45255575
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcac 257  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||    
T  45255655 gctcaacaccaagagagaacaaacctgccaccgaaatggatttattctcagaaagatcaaacaacctagggaacctctcac 45255575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 17658980 - 17659071
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaa 103  Q
    ||||||| | |||||||||||||| |||||| ||  ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  17658980 atgaaccacaaacagtgtaaccctcaatagggtcaagcaaccacacccacctgtcagaaacaaaatctagcagagaaacatcagtcaataaa 17659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 23680476 - 23680563
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||| | |||||||   |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  23680476 gctcaacaccaagagagaacagacctgccactaaaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacgaaaaga 23680563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 17659145 - 17659232
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| |||||||||| ||| | | ||||||| |||||| ||||||||||| |||||||| ||||||||||||||| |||||| |||||    
T  17659145 gctccacaccaagagagaatagacctgccactgtaatgtatttgttctcaaaaagatcatacaacctaggaaacctctcacagaaaga 17659232  T

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Target: scaffold0179 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 7679 - 7770
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7679 gaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagc 7770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 12613 - 12704
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12613 gaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagc 12704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 7842 - 7929
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||| ||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  7842 gctcaacaccaagagagaaaaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaaga 7929  T

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Target: scaffold0179; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 12776 - 12863
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||| ||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  12776 gctcaacaccaagagagaaaaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaaga 12863  T

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Target: scaffold0007 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 182429 - 182516
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182429 gctcaacaccaagagagaacaaacctgcgaccgaaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 182516  T

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Target: scaffold0007; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 182280 - 182371
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| |||||||||||||||| || ||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  182280 gaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 182371  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 20208708 - 20208617
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  20208708 gaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacataaacttgcagagaaacatcagtcaataaagc 20208617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 7000756 - 7000663
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||||| | | || |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  7000756 atgaaccgcgaacagtgtaaccctcagtggggtctggcaaccacacccacttgtctgaaacagaatctagcagagaaacatcaatcaataaagc 7000663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 4415526 - 4415439
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||    
T  4415526 gctcaacaccaagagagaacaagtctgccaccgtaatggatttgttctcaacaagatcgaacaacctaggaaaccgctcacacaaaga 4415439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 6049366 - 6049465
Alignment:
Q  6 agtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| |||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||    
T  6049366 agtgatatgaaccgcgaacagtataacccttaacagggtctggcaaccacacccacctgtcggaaaaaaaatcttgcaaagaaacatcagtcaataaagc 6049465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 20208545 - 20208458
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  20208545 gctcaacaccaagagagaacaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaaga 20208458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 6049535 - 6049615
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcac 257  Q
    |||| ||||||| || ||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  6049535 gctcgacaccaaaagagaacaaacctgccaccgtaatggatttattgtcagaaagatcaaacaacctaggaaacctctcac 6049615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 4415691 - 4415601
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    ||||||| ||||||| |||||||   | ||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  4415691 atgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 4415601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 7000591 - 7000504
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||| |||||||  |||| |  |||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  7000591 gctcaactccaagagaaaacagacatgccactgtaatggatttactctcagaaagatcgaacaacctaggaaaccgctcacaaaaaga 7000504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 26846018 - 26846109
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26846018 gaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagc 26846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 26846181 - 26846268
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  26846181 gctcaacaccaagagagaacaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaaga 26846268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 47537411 - 47537510
Alignment:
Q  6 agtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| ||||||| |||||||||||||||| || ||| |||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||    
T  47537411 agtgatatgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctaaaacaaaatctagcagaaaaacatcagtcaataaagc 47537510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 47537582 - 47537669
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  47537582 gctcaacaccaagagagaacagacctgccactgtaatggatttgttctcagaaagatcgaacaacctagtaaaccgctcacaaaaaga 47537669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 48192113 - 48192200
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||| |||||    
T  48192113 gctcaacaccaagagagaacaagtttgccaccgtaatggatttgttctcagaaaaatcgaacaacctagaaaaccgcccacacaaaga 48192200  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 50544538 - 50544625
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||| ||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||| | ||||| ||| |||||||||||    
T  50544538 gctcaactccaagagagaacaaattggccaccgtaatggatttgttctcataaagatcaaacaatcgaggaatccggtcacaaaaaga 50544625  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 50544375 - 50544465
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaag 104  Q
    ||||||||||| | |||||||| |  ||| ||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||    
T  50544375 gaaccgcgaactgagtaaccctcaccagggtctggcagccacacccatctgtctgaaacaaattcttgcagagaaacatcagtcaataaag 50544465  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 48191943 - 48192038
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| ||||||| ||||||| |||||||   | ||| ||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  48191943 gtgatatgaaccacgaacagagtaacccaccaaagggtctggaaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 48192038  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 33121313 - 33121237
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgca 83  Q
    |||| ||||||| ||||||| |||||||   | ||| ||||||||||||||||||||||| |||||| |||||||||    
T  33121313 gtgatatgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgca 33121237  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 46908490 - 46908447
Alignment:
Q  182 acaccaagagtgaacaaatctgccaccgtaatggatttgttctc 225  Q
    |||||||||| ||||||||  |||||||||||||||||||||||    
T  46908490 acaccaagagagaacaaattcgccaccgtaatggatttgttctc 46908447  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 8943679 - 8943712
Alignment:
Q  194 aacaaatctgccaccgtaatggatttgttctcag 227  Q
    ||||||| ||||||||||||||||||||||||||    
T  8943679 aacaaatttgccaccgtaatggatttgttctcag 8943712  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 19222304 - 19222260
Alignment:
Q  25 agtgtaaccctgaataggatctggcaaccacacccacctgtctga 69  Q
    |||| |||||| || ||| ||||||||||||||||||||||||||    
T  19222304 agtgcaaccctcaacagggtctggcaaccacacccacctgtctga 19222260  T

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Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 17708293 - 17708380
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  17708293 gctcaacaccaagagagaacaagtctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacacaaaga 17708380  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 10710987 - 10710900
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10710987 gctctacactaagagagaacaaacctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaatcgctcacaaaaaga 10710900  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 30110751 - 30110664
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    |||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30110751 gctctacaccaagagagaacaaacctgccaccgtaatagatttgttctcagaaagatcaaacaacctaggaaacctctcacaaaaaga 30110664  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 26720812 - 26720903
Alignment:
Q  14 gaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    |||||||||||||||||||||| || ||| |||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  26720812 gaaccgcgaacagtgtaaccctcaacagggtctgacgaccacacccacctgtctgaaacaaaaacttgcagagaaacatcagtcaataaagc 26720903  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 26720947 - 26721034
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  26720947 gctcaacaccaagagagaacaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaaga 26721034  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 10711152 - 10711060
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaag 104  Q
    ||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||| |||||||    
T  10711152 atgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacaaaatcttggaaagaaacatcagttaataaag 10711060  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 47106509 - 47106435
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaacc 251  Q
    ||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  47106509 gctcaacaccaagagagaacaaacctgccaccgtaatgaatttattctcagaaagatcaaacaacctaggaaacc 47106435  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 47106677 - 47106579
Alignment:
Q  6 agtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataaagc 105  Q
    ||||| ||||||||||||||||  | |||| || ||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  47106677 agtgatatgaaccgcgaacagta-acccctcaacagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaagc 47106579  T

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Target: chr1; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 17708123 - 17708218
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| ||||||| ||||||| |||||||  || ||| | ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  17708123 gtgatatgaaccacgaacagagtaacccacaaaagggtttggcaaccacacccatctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 17708218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 30110921 - 30110829
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaa 99  Q
    |||| ||||||| ||||| ||||| |||| || ||| ||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  30110921 gtgatatgaaccccgaactgtgtacccctcaaaagggtctggtaaccacacccacctatctgaaacaaaatcttgtagagaaacatcagtcaa 30110829  T

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Target: scaffold0912 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 2699 - 2612
Alignment:
Q  177 gctcaacaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||||||| ||||||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2699 gctcaacaccaagagagaacaaacctgccactgaaatggatttgttctcagaaacatcaaacaacctaggaaaccgctcacaaaaaga 2612  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 1380231 - 1380321
Alignment:
Q  12 atgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    ||||||||||||||| |||||||  |||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  1380231 atgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacataatcttgcaaagaaacatcagtcaataa 1380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 1380401 - 1380483
Alignment:
Q  182 acaccaagagtgaacaaatctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaaga 264  Q
    ||||||||||  |||||||||||||||| || | |||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  1380401 acaccaagagaaaacaaatctgccaccgaaaagaatttgttcacagagagatcgaacaacctaggaaaccgctcacaaaaaga 1380483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 2999744 - 2999649
Alignment:
Q  7 gtgagatgaaccgcgaacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacagaatcttgcagagaaacatcagtcaataa 102  Q
    |||| |||||||  |||||| |||||||   | ||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  2999744 gtgatatgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 2999649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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