View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19069_high_11 (Length: 389)
Name: NF19069_high_11
Description: NF19069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19069_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 36476186 - 36476566
Alignment:
| Q |
1 |
tgctgcaaattaattcgtcttctgactaggaagattttccagcacgagaaataccaaatctgcaatatctgatgcatttccggcaatattctgccgctga |
100 |
Q |
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| T |
36476186 |
tgctgcaaatcaattcgtcttctgactaggaagattttccagcacgagaaataccaaatctgcaatatctgatgcatttccggcaatattctgcagctga |
36476285 |
T |
|
| Q |
101 |
ttcaagcatccagcttctgtccagacctgcgatgtattggacattgaatccctctcat-------aaccaatctctcgcgtgtaggaaggaagccatgag |
193 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36476286 |
ttccagcatccagcttctgtccagacctgcgatgtattggacattgaatccctctcataagtcataaccaatctctcgcgtgtaggaaggaagccatgag |
36476385 |
T |
|
| Q |
194 |
cacacctccgaatgaacaatttgatcttatttgggacctttaatttccagattttgatccaatctccttgtattcttgacagagtattttccatttctat |
293 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36476386 |
cacacctccgaatgaacaatttgatcttatttaggacctttaatttccagattttgatccaatctccttgtattcttgacagagtattttccatttctat |
36476485 |
T |
|
| Q |
294 |
ttagcctccacaccgttgtgtcctctccatgaaattgaactggtatttttaatatctctgtttgtcccttgggttgaaatt |
374 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36476486 |
ttagcctccacgccgttgtgtcctctccatgaaattgaactggtattttcaatatctctgtttgtcccttgggttgaaatt |
36476566 |
T |
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